# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	8.43e-15		
1dmmA	131	10.07	d.17.4.3	38114
1wcuA	153	10.71		
2ia4A	287	12.08		
1oygA	447	12.52	b.67.2.2	93726
2g2kA	170	12.87		
2amhA	207	17.08	c.51.4.2	127019
1qw2A	102	18.05	d.249.1.1	96456
2cxcA	144	21.35		
1x9nA	688	25.84	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
3d9rA	135	26.61	d.17.4.27	157459
2w83A	165	27.08		
2i62A	265	27.30		
1oh0A	131	32.28	d.17.4.3	87004
3ebtA	132	34.36	d.17.4.9	158086
3m05A	114	39.06		
3c8nA	356	39.91		
3fxaA	201	40.14		
3k0zA	159	43.66		
2cfmA	561	45.84		
3h0dA	155	46.93		
2bo1A	101	47.29	d.79.3.1	146161
2gu3A	136	48.83	d.17.1.6,d.17.1.6	147178,147179
1kbvA	327	49.05	b.6.1.3,b.6.1.3	68395,68396
1py5A	326	49.33	d.144.1.7	104389
2e9yA	316	51.24		
2vhaA	287	52.67		
1efpB	252	54.56	c.26.2.3	31636
3hx8A	129	54.84		
1rieA	129	55.76	b.33.1.1	24427
2yvlA	248	58.71		
1wi5A	119	59.50	b.40.4.5	114661
1iznA	286	60.15	e.43.1.1	83847
2zxdA	455	61.29		
1hl9A	449	62.59	b.71.1.3,c.1.8.11	90650,90651
1giqA	413	64.78	d.166.1.1,d.166.1.1	76224,76225
2bngA	149	66.57	d.17.4.8	146156
1ro2A	216	68.28	d.264.1.2	97665
3b9fI	395	69.08		
3hmmA	303	69.35		
1sekA	378	72.44	e.1.1.1	42675
2q8gA	407	74.61		
1s62A	106	74.79	d.212.1.1	118874
2r15A	212	75.78		
3da1A	561	77.73		
1vjyA	303	78.99	d.144.1.7	108633
3d5pA	144	80.66		
1me4A	215	81.16	d.3.1.1	79023
2uy2A	294	83.23		
1tqxA	227	84.29	c.1.2.2	112614
1dtdA	303	85.73	c.56.5.1	33823
1nj4A	363	86.46	b.105.1.1,e.3.1.1	80545,80546
2a15A	139	88.40	d.17.4.3	125973