# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.97e-14		
1rieA	129	4.590	b.33.1.1	24427
1qw2A	102	6.185	d.249.1.1	96456
2amhA	207	6.746	c.51.4.2	127019
1dmmA	131	6.952	d.17.4.3	38114
2g2kA	170	11.31		
2cxcA	144	12.64		
1oh0A	131	13.12	d.17.4.3	87004
1efpB	252	13.66	c.26.2.3	31636
3d9rA	135	16.80	d.17.4.27	157459
2bo1A	101	17.82	d.79.3.1	146161
3hx8A	129	18.70		
2ek0A	90	19.09		
3ebtA	132	20.16	d.17.4.9	158086
2uy2A	294	24.90		
3e4fA	265	25.03		
3fgyA	135	25.60		
1wcuA	153	25.85		
3lmsA	309	25.97		
1dtdA	303	26.09	c.56.5.1	33823
1py5A	326	27.53	d.144.1.7	104389
1kjqA	391	28.33	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1ro0A	216	31.44	d.264.1.2	97664
2ia4A	287	31.49		
2yvlA	248	32.77		
1nj4A	363	33.20	b.105.1.1,e.3.1.1	80545,80546
1w41A	101	35.37	d.79.3.1	145812
1wi5A	119	37.36	b.40.4.5	114661
1vrmA	325	38.19	d.96.2.1	120472
3c8nA	356	38.52		
2cfmA	561	39.90		
1q74A	303	40.04	c.134.1.1	96019
2bngA	149	40.21	d.17.4.8	146156
3k0zA	159	40.23		
3iehA	276	41.20		
1vjyA	303	43.98	d.144.1.7	108633
1p4oA	322	43.99	d.144.1.7	87775
2w83A	165	45.45		
1jj2F	119	45.59	d.79.3.1	63091
3cpqA	110	46.14		
3laeA	81	46.47		
3ijwA	268	47.17		
1ocvA	125	51.86	d.17.4.3	86810
1gwmA	153	53.54	b.18.1.19	83348
1ro2A	216	53.84	d.264.1.2	97665
2pvuA	272	55.26		
3id5C	130	55.27		
2gu3A	136	55.53	d.17.1.6,d.17.1.6	147178,147179
2zfdB	123	56.23		
3hmmA	303	56.70		
1xbiA	120	56.85	d.79.3.1	121840
3l2nA	395	57.22		
3fh1A	129	57.40		
2b81A	323	57.69		
1z5rA	306	60.74	c.56.5.1	124488
1pxwA	128	60.94	d.79.3.1	95305
2e9yA	316	62.76		
2zxdA	455	64.82		
2a67A	167	70.35		
1oygA	447	70.72	b.67.2.2	93726
2hy1A	280	71.14	d.159.1.11	147437
3ggmA	81	73.41		
1ppjE	196	73.42	b.33.1.1,f.23.12.1	104260,104261
1nykA	165	73.58	b.33.1.1	86408
3juuA	280	76.18		
3fdjA	278	77.16		
1hjxA	362	78.82	c.1.8.5,d.26.3.1	83512,83513
2dt8A	280	80.31		
3fttA	199	80.61		
2vhaA	287	80.86		
1h7mA	102	80.88	d.79.3.1	83485
2o1rA	81	81.97	d.145.1.4	148549
3g98A	111	82.76		
2r15A	212	83.01		
3g8zA	148	83.82		
2qvpA	275	84.24		
1s5aA	150	85.09	d.17.4.10	98525
1zwzA	126	85.51	d.79.3.1	146031
3b8lA	163	86.83	d.17.4.28	154955
3m05A	114	86.87		
3fjuA	307	87.38		
3ff2A	117	89.49