# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.27e-13		
2cxcA	144	8.414		
2ia4A	287	9.789		
1dmmA	131	11.30	d.17.4.3	38114
1wcuA	153	12.91		
1oh0A	131	16.95	d.17.4.3	87004
3ebtA	132	18.74	d.17.4.9	158086
2j8gA	339	19.62	b.109.1.1,c.1.8.8	147915,147916
1rieA	129	20.66	b.33.1.1	24427
3h0dA	155	27.89		
2vhaA	287	28.07		
1vrmA	325	28.42	d.96.2.1	120472
2g2kA	170	30.38		
2amhA	207	30.40	c.51.4.2	127019
1lucB	324	30.61	c.1.16.1	29548
2w83A	165	31.87		
1gwmA	153	34.02	b.18.1.19	83348
3llbA	83	35.39		
1qw2A	102	35.48	d.249.1.1	96456
2bo1A	101	35.74	d.79.3.1	146161
1oygA	447	35.88	b.67.2.2	93726
3laeA	81	36.28		
3c8nA	356	36.29		
3b9fI	395	36.85		
3d9rA	135	36.90	d.17.4.27	157459
2b7uA	257	36.95		
2bngA	149	37.05	d.17.4.8	146156
2uy2A	294	37.37		
2r2zA	93	41.57	d.145.1.4	151544
2v25A	259	46.52		
1x9nA	688	46.93	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1efpB	252	47.18	c.26.2.3	31636
1nykA	165	49.21	b.33.1.1	86408
3m05A	114	49.58		
2r15A	212	51.66		
1sekA	378	51.68	e.1.1.1	42675
3k0zA	159	52.08		
2gu3A	136	54.62	d.17.1.6,d.17.1.6	147178,147179
3hx8A	129	56.38		
3hmmA	303	56.75		
2cfmA	561	57.58		
1rl0A	255	60.79	d.165.1.1	111859
2i62A	265	62.28		
1kjqA	391	63.18	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2d74B	148	63.58		
1xt8A	292	64.50	c.94.1.1	122293
1py5A	326	64.59	d.144.1.7	104389
3fgyA	135	64.74		
2pliA	91	64.95	d.145.1.4	149630
2o1rA	81	64.95	d.145.1.4	148549
3lmsA	309	65.46		
1x31C	206	65.63		
3cpqA	110	68.70		
1rhcA	330	70.12	c.1.16.3	97468
2r41A	110	70.34		
1giqA	413	74.12	d.166.1.1,d.166.1.1	76224,76225
3fh1A	129	74.56		
1w41A	101	76.20	d.79.3.1	145812
2pvuA	272	81.17		
3e7eA	365	81.23		
3fvyA	728	81.83		
1lp8A	254	83.26	d.165.1.1	91082
1me4A	215	84.61	d.3.1.1	79023
2q8gA	407	85.19		
3a0sA	96	85.26		
1hl9A	449	85.56	b.71.1.3,c.1.8.11	90650,90651