# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.05e-14		
2ia4A	287	6.784		
1rieA	129	11.04	b.33.1.1	24427
1wcuA	153	12.37		
1dmmA	131	14.79	d.17.4.3	38114
2cxcA	144	15.13		
2j8gA	339	16.17	b.109.1.1,c.1.8.8	147915,147916
2g2kA	170	20.92		
2bo1A	101	21.31	d.79.3.1	146161
3b9fI	395	22.79		
2vhaA	287	24.24		
1lucB	324	27.99	c.1.16.1	29548
2v25A	259	28.37		
2amhA	207	28.38	c.51.4.2	127019
1oh0A	131	31.32	d.17.4.3	87004
2uy2A	294	31.70		
3h0dA	155	34.45		
1efpB	252	36.81	c.26.2.3	31636
2i62A	265	37.14		
3c8nA	356	38.98		
1me4A	215	40.43	d.3.1.1	79023
1py5A	326	41.85	d.144.1.7	104389
1sekA	378	42.23	e.1.1.1	42675
3ebtA	132	42.77	d.17.4.9	158086
2bngA	149	43.40	d.17.4.8	146156
1hl9A	449	44.88	b.71.1.3,c.1.8.11	90650,90651
3hmmA	303	47.19		
3m05A	114	49.78		
3cpqA	110	51.23		
3d9rA	135	52.03	d.17.4.27	157459
1w41A	101	53.14	d.79.3.1	145812
2d74B	148	53.61		
2q8gA	407	53.78		
1gwmA	153	55.53	b.18.1.19	83348
2pvuA	272	56.28		
1x31C	206	56.53		
2b7uA	257	56.98		
1giqA	413	58.39	d.166.1.1,d.166.1.1	76224,76225
1vjyA	303	58.52	d.144.1.7	108633
3fvyA	728	60.84		
3llbA	83	65.94		
3fxaA	201	66.01		
2fxuA	375	66.77	c.55.1.1,c.55.1.1	134340,134341
1lstA	239	67.01	c.94.1.1	35755
1x9nA	688	68.73	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1xt8A	292	71.58	c.94.1.1	122293
1oygA	447	72.89	b.67.2.2	93726
1vrmA	325	73.30	d.96.2.1	120472
1rhcA	330	73.92	c.1.16.3	97468
3k0zA	159	74.42		
3icoA	268	81.54		
1tuhA	156	85.65	d.17.4.11	107345
3hx8A	129	86.13		
1nmuB	104	86.75	d.79.3.1	80666
2zxdA	455	87.05		
2x8xX	235	87.72