# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	5.22e-14		
1wcuA	153	6.569		
2ia4A	287	6.596		
1rieA	129	8.352	b.33.1.1	24427
1dmmA	131	10.01	d.17.4.3	38114
2cxcA	144	12.09		
2g2kA	170	14.31		
1oh0A	131	19.60	d.17.4.3	87004
2j8gA	339	23.38	b.109.1.1,c.1.8.8	147915,147916
3b9fI	395	23.49		
1lucB	324	23.83	c.1.16.1	29548
2uy2A	294	24.18		
3c8nA	356	25.55		
1gwmA	153	26.79	b.18.1.19	83348
2bo1A	101	26.95	d.79.3.1	146161
2vhaA	287	27.56		
2v25A	259	30.11		
3m05A	114	32.93		
1efpB	252	33.23	c.26.2.3	31636
2amhA	207	35.15	c.51.4.2	127019
3ebtA	132	35.43	d.17.4.9	158086
3h0dA	155	36.88		
2i62A	265	38.49		
3d9rA	135	40.06	d.17.4.27	157459
2bngA	149	40.48	d.17.4.8	146156
1xt8A	292	44.25	c.94.1.1	122293
3hmmA	303	48.12		
1py5A	326	50.36	d.144.1.7	104389
1sekA	378	51.65	e.1.1.1	42675
2b7uA	257	52.97		
1x9nA	688	53.00	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1rhcA	330	53.49	c.1.16.3	97468
3llbA	83	54.57		
1x31C	206	55.35		
1oygA	447	55.78	b.67.2.2	93726
2cfmA	561	57.61		
1lstA	239	61.58	c.94.1.1	35755
3laeA	81	61.79		
2pvuA	272	62.85		
1w41A	101	64.77	d.79.3.1	145812
3k0zA	159	66.25		
1hl9A	449	66.75	b.71.1.3,c.1.8.11	90650,90651
1vjyA	303	67.10	d.144.1.7	108633
2d74B	148	68.90		
1me4A	215	69.61	d.3.1.1	79023
1tuhA	156	69.67	d.17.4.11	107345
3cpqA	110	73.32		
2hy1A	280	74.13	d.159.1.11	147437
3lmsA	309	75.01		
2b81A	323	80.97		
1nykA	165	81.38	b.33.1.1	86408
2hivA	621	81.98		
1vrmA	325	84.01	d.96.2.1	120472
1nmuB	104	84.90	d.79.3.1	80666
1rl0A	255	85.21	d.165.1.1	111859
2r2zA	93	85.26	d.145.1.4	151544
2q8gA	407	88.66		
3fh1A	129	89.19