# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.00e-16		
2b81A	323	4.668		
2uy2A	294	5.360		
3c8nA	356	7.531		
2cfmA	561	8.177		
1wcuA	153	10.75		
2bo1A	101	20.91	d.79.3.1	146161
2hivA	621	21.47		
1q74A	303	23.07	c.134.1.1	96019
1gwmA	153	25.65	b.18.1.19	83348
2d74B	148	27.43		
1nykA	165	28.49	b.33.1.1	86408
2g2kA	170	28.66		
1tkeA	224	31.07	d.15.10.1,d.67.1.1	112470,112471
2yvlA	248	31.71		
2pvuA	272	34.72		
1a0iA	348	36.32	b.40.4.6,d.142.2.1	25363,41577
1dmmA	131	36.86	d.17.4.3	38114
2amhA	207	37.28	c.51.4.2	127019
1kjqA	391	41.77	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
3leqA	126	43.26		
3fxtA	113	44.29		
3ebtA	132	45.27	d.17.4.9	158086
3lmsA	309	45.46		
1nqkA	381	46.70	c.1.16.4	92050
3hduA	157	46.99		
3da1A	561	47.40		
1nj4A	363	48.78	b.105.1.1,e.3.1.1	80545,80546
3m7iA	635	49.99		
2pn0A	141	51.95		
3k95A	669	52.15		
3l84A	632	52.89		
3gwrA	144	54.98		
1yb2A	275	61.62	c.66.1.13	122868
2wagA	220	63.17		
3m49A	690	63.80		
3m05A	114	64.66		
2o1mA	258	66.21		
2cxcA	144	67.36		
3eatX	293	68.36		
1w41A	101	70.70	d.79.3.1	145812
3k0zA	159	73.45		
3etjA	355	73.96	b.84.2.1,c.30.1.1,d.142.1.2	158204,158205,158206
3do8A	148	74.38		
1ypyA	184	76.96		
1vg5A	73	77.80	a.5.2.1	113640
2vhaA	287	78.99		
3g41A	246	81.33		
3komA	663	84.09		
2v25A	259	85.17		
1sg0A	230	85.46	c.23.5.3	118955