# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.59e-14		
1dmmA	131	5.734	d.17.4.3	38114
1wcuA	153	12.66		
1oh0A	131	14.08	d.17.4.3	87004
2g2kA	170	14.75		
2cfmA	561	16.74		
3d9rA	135	16.96	d.17.4.27	157459
1qw2A	102	18.23	d.249.1.1	96456
2amhA	207	18.75	c.51.4.2	127019
3ebtA	132	19.97	d.17.4.9	158086
2cxcA	144	20.31		
1kjqA	391	23.15	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2i62A	265	28.72		
1iznA	286	28.83	e.43.1.1	83847
1gwmA	153	30.39	b.18.1.19	83348
1hl9A	449	30.68	b.71.1.3,c.1.8.11	90650,90651
1vrmA	325	35.42	d.96.2.1	120472
3b9fI	395	35.82		
2j8gA	339	36.64	b.109.1.1,c.1.8.8	147915,147916
1q74A	303	38.21	c.134.1.1	96019
1py5A	326	38.32	d.144.1.7	104389
3hx8A	129	38.47		
2ia4A	287	38.54		
3c8nA	356	39.38		
1fjgE	162	39.54	d.14.1.1,d.50.1.2	37553,38789
2bo1A	101	40.05	d.79.3.1	146161
3m05A	114	40.77		
1x9nA	688	40.81	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
3k0zA	159	42.29		
2uy2A	294	42.75		
3llbA	83	47.62		
3lmsA	309	50.30		
2vhaA	287	50.52		
3fh1A	129	52.97		
1nykA	165	53.03	b.33.1.1	86408
1dtdA	303	53.23	c.56.5.1	33823
2d74B	148	54.08		
3fgyA	135	55.64		
1nmuB	104	57.92	d.79.3.1	80666
2gu3A	136	60.41	d.17.1.6,d.17.1.6	147178,147179
2w83A	165	61.09		
2pliA	91	62.00	d.145.1.4	149630
2zxdA	455	62.70		
2pvuA	272	65.22		
3fxaA	201	66.40		
1w41A	101	69.36	d.79.3.1	145812
2v25A	259	69.83		
3e8pA	164	72.65		
2bngA	149	76.13	d.17.4.8	146156
1sekA	378	76.60	e.1.1.1	42675
3lk41	286	77.32		
1rieA	129	79.49	b.33.1.1	24427
1me4A	215	79.59	d.3.1.1	79023
2r2zA	93	81.47	d.145.1.4	151544
2x8xX	235	83.07		
3etjA	355	86.25	b.84.2.1,c.30.1.1,d.142.1.2	158204,158205,158206
1p4oA	322	86.51	d.144.1.7	87775
3e7eA	365	88.49		
3h0dA	155	89.15