# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.78e-14		
1dmmA	131	8.178	d.17.4.3	38114
2g2kA	170	15.20		
1kjqA	391	15.40	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2i62A	265	15.97		
2amhA	207	16.19	c.51.4.2	127019
1wcuA	153	16.48		
3d9rA	135	19.32	d.17.4.27	157459
2uy2A	294	22.34		
3b9fI	395	24.69		
1oh0A	131	25.49	d.17.4.3	87004
1q74A	303	28.00	c.134.1.1	96019
1py5A	326	29.61	d.144.1.7	104389
2cfmA	561	30.15		
2ia4A	287	30.94		
2j8gA	339	31.26	b.109.1.1,c.1.8.8	147915,147916
3m05A	114	32.77		
1iznA	286	34.12	e.43.1.1	83847
1hl9A	449	35.44	b.71.1.3,c.1.8.11	90650,90651
3fxaA	201	38.05		
2bo1A	101	40.01	d.79.3.1	146161
3ebtA	132	42.89	d.17.4.9	158086
3c8nA	356	43.95		
1gwmA	153	44.45	b.18.1.19	83348
3etjA	355	44.45	b.84.2.1,c.30.1.1,d.142.1.2	158204,158205,158206
2cxcA	144	44.62		
1lucB	324	49.11	c.1.16.1	29548
3k0zA	159	50.96		
2d74B	148	53.26		
2vhaA	287	56.73		
2pvuA	272	56.73		
1nmuB	104	56.86	d.79.3.1	80666
1sekA	378	57.57	e.1.1.1	42675
1rieA	129	57.64	b.33.1.1	24427
3fgyA	135	58.40		
1qw2A	102	60.27	d.249.1.1	96456
1fjgE	162	60.99	d.14.1.1,d.50.1.2	37553,38789
1me4A	215	61.05	d.3.1.1	79023
3llbA	83	62.96		
1kbvA	327	64.05	b.6.1.3,b.6.1.3	68395,68396
2zxdA	455	65.17		
1w41A	101	66.02	d.79.3.1	145812
2v25A	259	66.94		
2we5A	310	68.29		
1vrmA	325	71.60	d.96.2.1	120472
2e9yA	316	72.17		
3h0dA	155	75.02		
3hx8A	129	76.28		
3cpqA	110	84.15		
3fh1A	129	87.46		
1tqxA	227	87.47	c.1.2.2	112614
1x31C	206	88.60		
3fvyA	728	89.09		
1e4eA	343	89.61	c.30.1.2,d.142.1.1	59221,59222