# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	6.30e-17		
1dmmA	131	6.051	d.17.4.3	38114
1rieA	129	6.892	b.33.1.1	24427
1py5A	326	7.271	d.144.1.7	104389
1me4A	215	8.804	d.3.1.1	79023
2ia4A	287	10.70		
2amhA	207	12.27	c.51.4.2	127019
1oh0A	131	13.41	d.17.4.3	87004
1wcuA	153	14.33		
3c8nA	356	16.02		
2bo1A	101	17.28	d.79.3.1	146161
3d9rA	135	22.93	d.17.4.27	157459
2vhaA	287	28.27		
2v25A	259	28.53		
3h0dA	155	29.77		
2g2kA	170	29.92		
1lucB	324	30.21	c.1.16.1	29548
2b81A	323	30.54		
3m05A	114	31.12		
1wi5A	119	31.36	b.40.4.5	114661
3b9fI	395	33.13		
1nqkA	381	33.72	c.1.16.4	92050
1nykA	165	36.94	b.33.1.1	86408
1rhcA	330	38.02	c.1.16.3	97468
3ebtA	132	38.03	d.17.4.9	158086
2pvuA	272	39.62		
1w41A	101	40.57	d.79.3.1	145812
3k0zA	159	42.38		
2zxdA	455	42.67		
1hl9A	449	43.29	b.71.1.3,c.1.8.11	90650,90651
2d74B	148	44.40		
3lmsA	309	46.30		
3hx8A	129	50.27		
1vjyA	303	53.31	d.144.1.7	108633
3fh1A	129	54.59		
3cpqA	110	55.32		
2cfmA	561	57.18		
2cxcA	144	57.68		
2q8gA	407	58.00		
2r2zA	93	58.42	d.145.1.4	151544
2j0nA	200	58.64	a.250.1.1	137899
1xbiA	120	58.88	d.79.3.1	121840
2uy2A	294	59.81		
1sekA	378	62.38	e.1.1.1	42675
3fgyA	135	62.39		
1gwmA	153	62.69	b.18.1.19	83348
3icoA	268	62.81		
1dtdA	303	63.73	c.56.5.1	33823
1vrmA	325	64.12	d.96.2.1	120472
2yvlA	248	64.27		
3fvyA	728	64.47		
2pliA	91	64.60	d.145.1.4	149630
2j8gA	339	65.42	b.109.1.1,c.1.8.8	147915,147916
1tuhA	156	66.95	d.17.4.11	107345
1oygA	447	71.72	b.67.2.2	93726
3llbA	83	72.76		
2aifA	135	73.03	d.79.3.1	146055
1x31C	206	73.40		
3hmmA	303	76.78		
3fxaA	201	76.83		
3id5C	130	77.10		
1iznA	286	77.79	e.43.1.1	83847
1neeA	138	79.39	d.241.1.1,g.59.1.1	91841,91842
2bngA	149	79.40	d.17.4.8	146156
1giqA	413	79.56	d.166.1.1,d.166.1.1	76224,76225
3bfrA	215	82.28		
2hivA	621	83.39		
2pblA	262	84.63	c.69.1.2	149367
3fo5A	258	86.75		
2p4pA	86	87.62	d.145.1.4	149217
1x9nA	688	87.71	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1rl0A	255	88.44	d.165.1.1	111859