# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.56e-14		
2g2kA	170	12.79		
1dmmA	131	13.47	d.17.4.3	38114
1rieA	129	13.75	b.33.1.1	24427
1wcuA	153	14.84		
2ia4A	287	14.93		
2bo1A	101	15.49	d.79.3.1	146161
2cxcA	144	18.08		
3c8nA	356	21.46		
3h0dA	155	22.39		
1w41A	101	23.83	d.79.3.1	145812
2uy2A	294	25.98		
1oh0A	131	26.03	d.17.4.3	87004
1gwmA	153	27.45	b.18.1.19	83348
3fxaA	201	30.47		
1qw2A	102	31.32	d.249.1.1	96456
1lucB	324	32.11	c.1.16.1	29548
2amhA	207	32.49	c.51.4.2	127019
1nmuB	104	35.48	d.79.3.1	80666
3m05A	114	35.54		
3d9rA	135	37.76	d.17.4.27	157459
3cpqA	110	38.13		
2q8gA	407	38.27		
2b81A	323	39.79		
1xbiA	120	41.95	d.79.3.1	121840
2vhaA	287	42.08		
2yvlA	248	49.20		
2i62A	265	49.75		
1py5A	326	50.44	d.144.1.7	104389
3k95A	669	52.73		
1nykA	165	53.40	b.33.1.1	86408
1oygA	447	54.28	b.67.2.2	93726
1jj2F	119	55.20	d.79.3.1	63091
3b9fI	395	58.11		
3id5C	130	58.53		
2zxdA	455	61.02		
1ro2A	216	62.68	d.264.1.2	97665
3ebtA	132	62.83	d.17.4.9	158086
1pxwA	128	63.35	d.79.3.1	95305
2cfmA	561	64.78		
1efpB	252	68.93	c.26.2.3	31636
3lmsA	309	69.71		
1ro0A	216	70.54	d.264.1.2	97664
3k0zA	159	72.25		
1kjqA	391	72.59	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
1fjgE	162	78.02	d.14.1.1,d.50.1.2	37553,38789
1h7mA	102	78.99	d.79.3.1	83485
2ktsA	117	79.47		
1vrmA	325	80.38	d.96.2.1	120472
1hl9A	449	81.55	b.71.1.3,c.1.8.11	90650,90651
3hmmA	303	83.27		
2d74B	148	83.76		
2aifA	135	85.39	d.79.3.1	146055
1vjyA	303	86.90	d.144.1.7	108633
2fc3A	124	87.84	d.79.3.1	147019
1rhcA	330	89.79	c.1.16.3	97468