# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	1.19e-14		
1rieA	129	10.90	b.33.1.1	24427
2ia4A	287	11.43		
1dmmA	131	12.14	d.17.4.3	38114
2amhA	207	12.51	c.51.4.2	127019
2g2kA	170	13.52		
2uy2A	294	16.48		
2bo1A	101	18.05	d.79.3.1	146161
1wcuA	153	24.31		
2cxcA	144	24.40		
2vhaA	287	25.21		
1oh0A	131	27.34	d.17.4.3	87004
2b81A	323	28.79		
3c8nA	356	29.12		
1qw2A	102	33.04	d.249.1.1	96456
3lmsA	309	36.92		
2q8gA	407	37.50		
2yvlA	248	38.61		
2cfmA	561	39.78		
3k0zA	159	41.08		
1iznA	286	42.50	e.43.1.1	83847
2d74B	148	43.07		
1lucB	324	43.90	c.1.16.1	29548
1gwmA	153	43.93	b.18.1.19	83348
1w41A	101	44.47	d.79.3.1	145812
3h0dA	155	44.96		
1py5A	326	46.46	d.144.1.7	104389
2v25A	259	47.13		
1vrmA	325	48.13	d.96.2.1	120472
3m05A	114	48.20		
2pvuA	272	52.66		
1rhcA	330	53.92	c.1.16.3	97468
3hmmA	303	55.39		
2pblA	262	56.10	c.69.1.2	149367
1ro2A	216	56.66	d.264.1.2	97665
3d9rA	135	57.79	d.17.4.27	157459
2bngA	149	57.80	d.17.4.8	146156
2zxdA	455	59.38		
3b9fI	395	60.97		
2w83A	165	61.85		
3cpqA	110	64.70		
3llbA	83	66.04		
1vjyA	303	66.16	d.144.1.7	108633
1nqkA	381	68.00	c.1.16.4	92050
1x9nA	688	72.10	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1nykA	165	72.80	b.33.1.1	86408
1hl9A	449	75.09	b.71.1.3,c.1.8.11	90650,90651
3fxaA	201	75.31		
3hx8A	129	75.72		
2gu3A	136	76.81	d.17.1.6,d.17.1.6	147178,147179
2r2zA	93	77.92	d.145.1.4	151544
3immA	201	79.56		
3bfrA	215	80.88		
2pliA	91	81.49	d.145.1.4	149630
1oygA	447	81.68	b.67.2.2	93726
1ro0A	216	81.83	d.264.1.2	97664
3ebtA	132	83.22	d.17.4.9	158086
1me4A	215	87.15	d.3.1.1	79023
3a0sA	96	89.69