# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	3.01e-16		
1vrmA	325	8.606	d.96.2.1	120472
1wcuA	153	10.01		
3h0dA	155	10.98		
3b7eA	385	18.43		
2cfmA	561	21.22		
1giqA	413	25.68	d.166.1.1,d.166.1.1	76224,76225
3k95A	669	34.57		
3beqA	385	35.23		
2hivA	621	36.78		
1xrsA	516	40.93	c.1.19.4	115883
3m7iA	635	42.71		
2uy2A	294	44.37		
3ckzA	385	44.80		
3l84A	632	46.62		
3m49A	690	48.14		
3bmbA	136	48.50		
2htuA	390	50.45		
3ebtA	132	51.50	d.17.4.9	158086
1f8eA	388	58.78	b.68.1.1	59694
3eatX	293	61.33		
2b81A	323	64.81		
2pn0A	141	66.51		
3komA	663	66.54		
3cpqA	110	69.71		
1nscA	390	70.50	b.68.1.1	27591
2bo1A	101	70.63	d.79.3.1	146161
1tqxA	227	75.34	c.1.2.2	112614
1q0sA	259	75.85	c.66.1.28	95509
3cyeA	387	76.91		
3jxsA	174	80.70		
2hvmA	273	80.89	c.1.8.5	28985
1dmmA	131	81.60	d.17.4.3	38114