# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	2.12e-16		
1wcuA	153	1.208		
1x9nA	688	2.537	a.235.1.1,b.40.4.6,d.142.2.1	115002,115003,115004
1gwmA	153	3.941	b.18.1.19	83348
2cfmA	561	5.073		
2hivA	621	9.282		
1dmmA	131	12.03	d.17.4.3	38114
1giqA	413	17.98	d.166.1.1,d.166.1.1	76224,76225
2bc4B	211	25.26		
2w95A	254	25.57		
1ro2A	216	26.58	d.264.1.2	97665
1r45A	204	26.73	d.166.1.1	111683
2v25A	259	27.84		
1oh0A	131	29.93	d.17.4.3	87004
3ebtA	132	36.73	d.17.4.9	158086
3d9rA	135	37.69	d.17.4.27	157459
1ro0A	216	40.21	d.264.1.2	97664
1zkcA	197	40.32	b.62.1.1	125182
3k95A	669	47.32		
3g8zA	148	50.23		
1a0iA	348	50.98	b.40.4.6,d.142.2.1	25363,41577
2bo1A	101	51.39	d.79.3.1	146161
2vk2A	306	51.62		
3m49A	690	58.79		
2gu3A	136	58.92	d.17.1.6,d.17.1.6	147178,147179
2x8xX	235	60.14		
1sz6A	249	60.44	d.165.1.1	112171
2kkuA	161	60.57		
3bmbA	136	62.11		
3g02A	408	63.88		
3k0zA	159	65.74		
1qlpA	394	67.48	e.1.1.1	42628
1ymmA	191	67.88	b.1.1.2,d.19.1.1	123701,123702
2a15A	139	69.96	d.17.4.3	125973
2ehbD	143	71.40		
1s5aA	150	72.74	d.17.4.10	98525
2cclA	158	73.70	b.2.2.2	130248
3komA	663	76.06		
3dkcA	317	78.17		
2cxcA	144	78.49		
2v95A	371	79.54		
1vrmA	325	80.57	d.96.2.1	120472
3g79A	478	80.94		
3fgyA	135	81.98		
1rl0A	255	83.43	d.165.1.1	111859
3fgqA	397	84.43		
2bngA	149	88.15	d.17.4.8	146156