# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3lmmA	583	4.18e-07		
3citA	160	5.335		
3gzaA	443	6.734		
3f1sA	385	7.573		
2c8eE	211	8.376		
1knwA	425	11.15	b.49.2.3,c.1.6.1	90969,90970
2v95A	371	11.46		
2qp2A	511	12.58		
2ooiA	162	12.81	d.190.1.2	148926
2qugA	394	12.97		
2r41A	110	14.43		
2a9kB	223	15.49	d.166.1.1	126443
3edpA	236	15.57		
2j3xA	431	16.81		
2an1A	292	18.53		
1iysA	262	23.80	e.3.1.1	90723
1ojqA	212	25.20	d.166.1.1	93146
1sgjA	284	25.63	c.1.12.5	105535
3b9fI	395	25.66		
2p8tA	200	26.87	a.4.5.72,d.74.4.2	149315,149316
3gwrA	144	29.14		
3bw8A	217	30.45		
3jwgA	219	30.86		
2wn6A	463	31.22		
2cw9A	194	31.34	d.17.4.13	130920
1oc0A	379	34.01	e.1.1.1	86790
1r45A	204	36.25	d.166.1.1	111683
3f9xA	166	36.55		
3g8yA	391	36.66		
3i9fA	170	37.29		
1g8aA	227	37.48	c.66.1.3	90506
2vdxA	373	37.86		
3gzrA	146	40.85		
3cnvA	162	41.69	d.190.1.2	156844
3hyjA	198	42.37		
2obfA	289	42.71		
3ebyA	163	44.36	d.17.4.4	158087
3kkgA	146	45.12		
1ir21	140	48.64		
1zkkA	167	49.92		
1yljA	263	50.06		
1g8sA	230	50.58	c.66.1.3	90507
3f7sA	142	51.59		
3hx8A	129	52.65		
1r5rA	119	54.15	a.39.2.1	97104
1giqA	413	54.63	d.166.1.1,d.166.1.1	76224,76225
3d9rA	135	55.76	d.17.4.27	157459
1htwA	158	56.30	c.37.1.18	71083
1qlpA	394	57.28	e.1.1.1	42628
2wn4A	463	59.11		
1mtpA	323	59.21	e.1.1.1	85107
1jmoA	480	60.49	e.1.1.1	77138
2gu3A	136	61.13	d.17.1.6,d.17.1.6	147178,147179
1gk8I	140	62.65	d.73.1.1	65242
3cz1A	119	62.65		
1roaA	122	67.42	d.17.1.2	105024
3gwmA	129	68.06		
1vmfA	145	69.26	d.273.1.1	113673
2h4pA	394	70.00		
2hq4A	161	70.35	d.342.1.1	147327
2ahdA	165	71.53	d.159.1.7	126752
1yt5A	258	73.89		
2rbbA	141	75.94		
1ass	159	76.67		
1hl9A	449	76.89	b.71.1.3,c.1.8.11	90650,90651
2ol2A	395	77.60		
2owpA	129	79.16	d.17.4.18	149049
3eypA	469	79.65		
1assA	159	80.37	c.8.5.2	30818
3fh1A	129	80.87		
2ek0A	90	82.47		
2nwiA	172	83.69	d.190.1.3	148488
1xbyA	216	85.18	c.1.2.3	121846
1bwvS	138	86.00	d.73.1.1	39662
1q6oA	216	86.94	c.1.2.3	95986
2ex5A	207	87.77		
1wz9A	375	87.78		
2eisA	133	88.34		
3d78A	119	88.90