Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3lmmA/T0557-3lmmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3lmmA/T0557-3lmmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7386e-073.79e-25
1wcuA/T0557-1wcuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wcuA/T0557-1wcuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4817e+001.18e-08
1yzgA/T0557-1yzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yzgA/T0557-1yzgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4581e+003.09e-08 c.37.1.8
1hh1A/T0557-1hh1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hh1A/T0557-1hh1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0947e+012.56e-03 1gefA c.52.1.18
1vlmA/T0557-1vlmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vlmA/T0557-1vlmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2683e+011.72e-06 c.66.1.41
2a8eA/T0557-2a8eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2a8eA/T0557-2a8eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8259e+012.01e-05 d.296.1.1
2gu3A/T0557-2gu3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gu3A/T0557-2gu3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1230e+015.45e-11 d.17.1.6
d.17.1.6
1oygA/T0557-1oygA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1oygA/T0557-1oygA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4398e+015.71e-05 b.67.2.2
1ln1A/T0557-1ln1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ln1A/T0557-1ln1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4768e+011.10e-05 d.129.3.2
1x9nA/T0557-1x9nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1x9nA/T0557-1x9nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5109e+013.91e-05 a.235.1.1
b.40.4.6
d.142.2.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001