# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 7.58e-05 3l2nA 395 9.93e-01 1wcuA 153 1.99e+00 1f6bA 198 3.54e+00 c.37.1.8 64986 2qkmB 266 5.51e+00 1iz0A 302 6.42e+00 b.35.1.2,c.2.1.1 83821,83822 1xtmA 175 6.83e+00 1xtlA 175 7.70e+00 1oygA 447 7.91e+00 b.67.2.2 93726 3e7eA 365 8.71e+00 1s4iA 175 9.13e+00 2qtfA 364 9.14e+00 3h5kA 261 9.17e+00 1yzgA 179 9.38e+00 c.37.1.8 124276 3ckwA 304 9.88e+00 1apmE 350 1.05e+01 1cdkA d.144.1.7 41628 3kg7A 293 1.12e+01 1mkyA 439 1.14e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1rdqE 350 1.19e+01 d.144.1.7 97314 3gokA 334 1.22e+01 2zjrG 174 1.22e+01 c.21.1.1 154560 2w02A 620 1.22e+01 2i8dA 123 1.25e+01 d.198.4.1 147561 1j1qA 261 1.30e+01 d.165.1.1 90768 1kwmA 402 1.47e+01 c.56.5.1,d.58.3.1 73079,73080 1hh1A 143 1.48e+01 1gefA c.52.1.18 61036 2a6tA 271 1.48e+01 a.242.1.1,d.113.1.7 126309,126310 1ln1A 214 1.60e+01 d.129.3.2 74038 1c4kA 730 1.62e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1hw7A 255 1.66e+01 1i7fA d.193.1.1 61297 2nsqA 155 1.79e+01 1kshA 186 1.93e+01 c.37.1.8 72914 1wi1A 126 1.95e+01 b.55.1.1 114658 1qciA 262 1.99e+01 1qi7A d.165.1.1 42201 1x9nA 688 2.01e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 3hmiA 292 2.03e+01 3efyA 195 2.11e+01 2oxgA 108 2.16e+01 2f57A 317 2.24e+01 2oc6A 124 2.27e+01 d.198.4.1 148721 1xe0A 114 2.29e+01 b.121.3.1 115197 1om1A 332 2.36e+01 d.144.1.7 93347 1ds1A 324 2.42e+01 1drtA b.82.2.2 28127 3a7iA 303 2.65e+01 1wd3A 482 2.70e+01 b.29.1.21,b.42.8.1 109233,109234 2cirA 297 2.73e+01 1cfyA 143 2.80e+01 1cof d.109.1.2 40858 1ji6A 589 2.87e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2q3xA 171 2.91e+01 3l48A 94 2.98e+01 2bgoA 140 3.00e+01 2dyiA 162 3.07e+01 3cryA 188 3.12e+01 1m2rA 327 3.14e+01 d.144.1.7 84760 3fpqA 290 3.37e+01 2yyyA 343 3.52e+01 2j7tA 302 3.56e+01 2h6dA 276 3.64e+01 2zo4A 317 3.71e+01 2ww2A 737 3.91e+01 2wgoA 98 4.10e+01 1t4hA 290 4.11e+01 d.144.1.7 106420 1o3yA 166 4.13e+01 c.37.1.8 86618 1onqA 283 4.25e+01 b.1.1.2,d.19.1.1 93365,93366 2isnA 364 4.26e+01 1vraA 208 4.41e+01 1zwyA 185 4.43e+01 c.51.4.3 125753 2d74B 148 4.44e+01 1xh9A 350 4.52e+01 2go8A 122 4.54e+01 d.58.4.5 147144 2pvrA 334 4.57e+01 d.144.1.7 149893 1bwvS 138 4.58e+01 1rboC d.73.1.1 39662 1fvuB 125 4.61e+01 1ixxB d.169.1.1 42346 2a5dA 175 4.64e+01 c.37.1.8 126172 3c0iA 351 4.76e+01 3bqcA 335 4.77e+01 d.144.1.7 155497 1m2oB 190 4.85e+01 c.37.1.8 78485 1kobA 387 4.97e+01 1tkiA d.144.1.7 41640 3glaA 100 5.07e+01 1vlmA 219 5.28e+01 c.66.1.41 108836 2welA 327 5.35e+01 1q0pA 223 5.37e+01 c.62.1.1 95507 2c30A 321 5.47e+01 3fhrA 336 5.50e+01 3cifA 359 5.64e+01 2eo0A 147 5.70e+01 1hfuA 503 5.75e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 3fspA 369 6.00e+01 1hdfA 102 6.01e+01 1ag4 b.11.1.1 23627 2vatA 444 6.03e+01 c.69.1.40 152831 2vavA 444 6.08e+01 c.69.1.40 152844 3kfaA 288 6.11e+01 2cu2A 337 6.14e+01 b.81.4.1,c.68.1.20 146426,146427 2ov7A 137 6.27e+01 1vsvA 359 6.30e+01 2cbnA 306 6.53e+01 d.157.1.7 130191 3ec6A 139 6.53e+01 2h17A 181 6.63e+01 3ednA 299 6.67e+01 2mbrA 340 6.73e+01 d.145.1.2,d.146.1.1 41749,41762 1bvoA 175 6.74e+01 1a3qA b.2.5.3 22457 1uxy 340 6.77e+01 2mbr 1uxyA 340 6.77e+01 d.145.1.2,d.146.1.1 41748,41761 2hziA 277 6.85e+01 2oezA 247 6.90e+01 e.68.1.1 148758 1skoB 130 6.92e+01 d.110.7.1 105677 2fk6A 320 6.96e+01 d.157.1.7 133646 2gxfA 142 7.01e+01 d.17.4.22 147191 2wg5A 109 7.03e+01 1u59A 287 7.06e+01 d.144.1.7 107681 1b6fA 159 7.09e+01 1bv1 d.129.3.1 41316 2bo9A 308 7.20e+01 c.56.5.1 128897 2pd1A 104 7.31e+01 d.58.4.11 149387 1xodA 118 7.32e+01 b.55.1.4 122202 2cxcA 144 7.32e+01 2w83A 165 7.37e+01 2qr7A 342 7.48e+01 1e8oB 106 7.48e+01 1914 d.49.1.1 38775 2hwzH 227 7.63e+01 1j3bA 529 7.63e+01 c.91.1.1,c.109.1.1 77071,77072 2yzyA 200 7.71e+01 2f1nA 262 7.75e+01 d.151.1.1 132782 3hrzD 741 7.85e+01 3gk6A 170 7.92e+01 2qm4A 235 7.99e+01