# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 5.67e-05 1hh1A 143 7.41e-01 1gefA c.52.1.18 61036 1vlmA 219 7.81e-01 c.66.1.41 108836 2eo0A 147 3.44e+00 1wcuA 153 5.95e+00 1b5fA 239 6.11e+00 1smrA b.50.1.2 26836 1xtlA 175 7.32e+00 1y7pA 223 1.02e+01 c.23.1.7,d.58.18.12 122708,122709 1s4iA 175 1.12e+01 1fzqA 181 1.14e+01 1hurA c.37.1.8 32060 1xtmA 175 1.22e+01 1trbA 320 1.52e+01 c.3.1.5,c.3.1.5 30529,30530 2r4qA 106 1.73e+01 c.44.2.2 151580 3cjiC 284 1.75e+01 2qw5A 335 1.79e+01 2kkuA 161 1.85e+01 2a8eA 220 2.27e+01 d.296.1.1 126397 3lfxA 319 2.30e+01 3fdjA 278 2.31e+01 1yzgA 179 2.39e+01 c.37.1.8 124276 3fv3A 339 2.43e+01 1r3eA 309 2.47e+01 b.122.1.1,d.265.1.2 96907,96908 2iyfA 430 2.49e+01 2dnrA 91 2.54e+01 1j71A 334 2.54e+01 1eagA b.50.1.2 62669 1i1nA 226 2.56e+01 c.66.1.7 71102 2zjrG 174 2.59e+01 c.21.1.1 154560 1y10A 407 2.77e+01 1wr2A 238 3.05e+01 1cfyA 143 3.57e+01 1cof d.109.1.2 40858 2q3xA 171 3.67e+01 2vqrA 543 3.67e+01 3ejcA 169 3.73e+01 1r2jA 366 3.83e+01 a.29.3.1,e.6.1.1 96869,96870 2f1nA 262 3.99e+01 d.151.1.1 132782 3dciA 232 4.07e+01 3flpA 217 4.42e+01 2rffA 111 4.46e+01 3i6sA 649 4.47e+01 1qppA 218 4.54e+01 1qpxA b.1.11.1,b.7.2.1 22320,23202 2fp3A 316 4.57e+01 3lmbA 165 4.65e+01 2ifrA 206 4.78e+01 b.29.1.20 137346 1rypH 205 4.79e+01 d.153.1.4 41876 2f6rA 281 4.81e+01 3hdfA 140 4.87e+01 2w8sA 543 5.13e+01 2vapA 364 5.16e+01 c.32.1.1,d.79.2.1 152828,152829 2g0tA 350 5.20e+01 c.37.1.10 134499 3hg0A 169 5.29e+01 487dL 133 5.32e+01 1mmsA i.1.1.2 45839 3fauA 82 5.34e+01 3e0lA 455 5.40e+01 2h17A 181 5.61e+01 2kkxA 102 5.65e+01 1eq1A 166 5.69e+01 a.63.1.1 64910 2ifeA 100 5.83e+01 1tig d.68.1.1 39567 1jkeA 145 5.95e+01 c.110.1.1 66791 2uvpA 186 6.00e+01 1jpcA 109 6.02e+01 b.78.1.1 27986 1hdfA 102 6.06e+01 1ag4 b.11.1.1 23627 3hp7A 291 6.09e+01 2hnkA 239 6.15e+01 1ry9A 145 6.46e+01 d.198.1.1 98094 2nmmA 135 6.58e+01 d.322.1.1 138372 3lmcA 210 6.63e+01 2qdeA 397 6.64e+01 2wcwA 139 6.73e+01 3e15A 312 6.77e+01 3liiA 540 6.92e+01 2govA 195 6.95e+01 d.60.1.4 135447 1kcfA 258 6.99e+01 a.140.2.1,c.55.3.7 68434,68435 1m65A 245 7.16e+01 c.6.3.1 84847 2gebA 185 7.32e+01 3e0xA 245 7.33e+01 1yb3A 175 7.41e+01 d.296.1.2 122869 3biqA 467 7.42e+01 3kqnA 437 7.59e+01 3b8oA 265 7.73e+01 d.58.60.1 154973