# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 1.11e-04 3l2nA 395 3.28e-01 3ckwA 304 1.79e+00 1oygA 447 1.85e+00 b.67.2.2 93726 2a8eA 220 1.87e+00 d.296.1.1 126397 1yzgA 179 2.20e+00 c.37.1.8 124276 1kobA 387 2.74e+00 1tkiA d.144.1.7 41640 1kshA 186 2.92e+00 c.37.1.8 72914 2c30A 321 3.38e+00 1f6bA 198 3.40e+00 c.37.1.8 64986 2w02A 620 3.80e+00 2qtfA 364 4.17e+00 1iz0A 302 4.17e+00 b.35.1.2,c.2.1.1 83821,83822 1s4iA 175 4.47e+00 3a8jA 364 4.82e+00 1xtlA 175 4.86e+00 3a8kA 364 5.04e+00 2j7tA 302 5.47e+00 1xtmA 175 5.72e+00 3efyA 195 5.77e+00 1vloA 381 6.01e+00 b.44.2.1,d.250.1.1 108838,108839 2ov7A 137 6.16e+00 2f57A 317 7.11e+00 2dyiA 162 7.31e+00 1m2oB 190 8.63e+00 c.37.1.8 78485 2zjrG 174 9.61e+00 c.21.1.1 154560 3e7eA 365 9.82e+00 2h17A 181 9.99e+00 2a5dA 175 1.04e+01 c.37.1.8 126172 1mkyA 439 1.05e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3c0iA 351 1.06e+01 2f1nA 262 1.09e+01 d.151.1.1 132782 1kwmA 402 1.12e+01 c.56.5.1,d.58.3.1 73079,73080 1xe0A 114 1.18e+01 b.121.3.1 115197 1om1A 332 1.18e+01 d.144.1.7 93347 1cfyA 143 1.18e+01 1cof d.109.1.2 40858 1m2rA 327 1.20e+01 d.144.1.7 84760 1hl9A 449 1.21e+01 b.71.1.3,c.1.8.11 90650,90651 3hx9A 124 1.24e+01 3hmiA 292 1.26e+01 2qkmB 266 1.27e+01 1x9nA 688 1.30e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1wh0A 134 1.34e+01 b.15.1.3 114628 2w83A 165 1.45e+01 3kg7A 293 1.53e+01 3gokA 334 1.53e+01 2j0iA 303 1.57e+01 3a7iA 303 1.68e+01 2zo4A 317 1.78e+01 3cx2A 108 1.82e+01 2a6tA 271 1.82e+01 a.242.1.1,d.113.1.7 126309,126310 1o3yA 166 1.90e+01 c.37.1.8 86618 3er7A 131 1.94e+01 d.17.4.24 158191 1vkdA 338 1.94e+01 b.67.2.4 108644 2q66A 525 2.03e+01 a.160.1.1,d.218.1.3,d.58.16.1 150057,150058,150059 1wcuA 153 2.07e+01 2hziA 277 2.15e+01 1zj6A 187 2.19e+01 c.37.1.8 125145 1hw7A 255 2.27e+01 1i7fA d.193.1.1 61297 1ln1A 214 2.27e+01 d.129.3.2 74038 3fpqA 290 2.30e+01 1bvoA 175 2.32e+01 1a3qA b.2.5.3 22457 3h5kA 261 2.32e+01 1xodA 118 2.38e+01 b.55.1.4 122202 1wi1A 126 2.43e+01 b.55.1.1 114658 3dawB 164 2.53e+01 1fa0A 537 2.54e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1hh1A 143 2.56e+01 1gefA c.52.1.18 61036 1vs0A 310 2.59e+01 2bgoA 140 2.61e+01 2zxdA 455 2.65e+01 2kcpA 98 2.66e+01 2gcoA 201 2.71e+01 1qm4A 396 2.89e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 2hhpA 530 2.90e+01 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 2welA 327 2.99e+01 2p02A 396 3.01e+01 d.130.1.1,d.130.1.1,d.130.1.1 149132,149133,149134 1z57A 339 3.02e+01 1zc1A 208 3.39e+01 1uptA 171 3.49e+01 c.37.1.8 99767 1an7A 136 3.52e+01 1seiA d.140.1.1 41465 2hwzH 227 3.63e+01 1ukvY 206 3.67e+01 c.37.1.8 107918 1c9bB 180 3.70e+01 1ytbA d.129.1.1,d.129.1.1 41216,41217 1j3bA 529 3.71e+01 c.91.1.1,c.109.1.1 77071,77072 1t0qC 86 3.76e+01 d.15.12.1 106222 1j71A 334 3.78e+01 1eagA b.50.1.2 62669 2yxyA 115 3.81e+01 2wcwA 139 3.85e+01 1kmqA 184 3.95e+01 c.37.1.8 84412 2fm8A 135 3.96e+01 d.198.1.1 133767 2j5zA 221 3.99e+01 3ew1A 135 3.99e+01 1vsvA 359 4.02e+01 2cxcA 144 4.02e+01 2h6dA 276 4.04e+01 2bcgY 206 4.10e+01 c.37.1.8 128285 2q3xA 171 4.12e+01 1pqsA 77 4.15e+01 d.15.2.2 88277 1qciA 262 4.16e+01 1qi7A d.165.1.1 42201 2retA 103 4.18e+01 d.24.1.7 151983 3lxrA 185 4.19e+01 3cryA 188 4.21e+01 2nsqA 155 4.22e+01 1wgpA 137 4.26e+01 b.82.3.2 114619 2omdA 154 4.29e+01 2kkuA 161 4.38e+01 2pr1A 163 4.56e+01 2pziA 681 4.60e+01 3silA 379 4.65e+01 b.68.1.1 27542 1vmkA 277 4.65e+01 c.56.2.1 113680 1wsrA 375 4.65e+01 1aqdA 192 4.75e+01 1iakA b.1.1.2,d.19.1.1 21585,38159 2vouA 397 4.76e+01 c.3.1.2,d.16.1.2 153389,153390 1ji6A 589 4.78e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 3a06A 376 4.83e+01 2gxfA 142 4.83e+01 d.17.4.22 147191 3fo5A 258 4.83e+01 2incC 83 4.85e+01 d.15.12.1 137526 2pnqA 467 4.90e+01 1y0yA 353 4.92e+01 b.49.3.1,c.56.5.4 122514,122515 3cifA 359 4.92e+01 3ioxA 497 4.96e+01 3fhrA 336 5.05e+01 1vraA 208 5.15e+01 1rdqE 350 5.18e+01 d.144.1.7 97314 2oc6A 124 5.21e+01 d.198.4.1 148721 2b0rA 202 5.23e+01 1j1qA 261 5.23e+01 d.165.1.1 90768 3e5nA 386 5.28e+01 3eqcA 360 5.29e+01 3lahA 188 5.39e+01 3kfaA 288 5.39e+01 1y10A 407 5.42e+01 3ec6A 139 5.49e+01 3c5jA 181 5.53e+01 1whiA 122 5.54e+01 b.39.1.1 24810 1gycA 499 5.54e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 2bnmA 198 5.76e+01 a.35.1.3,b.82.1.10 128835,128836 3d36A 244 5.76e+01 1fvrA 327 5.77e+01 d.144.1.7 60047 3ednA 299 5.80e+01 2dj5A 133 5.82e+01 c.92.1.3 131536 1urjA 1136 5.82e+01 e.58.1.1 113410 2hlyA 207 5.86e+01 d.3.1.19 147310 3glaA 100 5.87e+01 3g12A 128 5.89e+01 2r41A 110 5.90e+01 1jmmA 377 5.96e+01 b.30.6.1 71749 1bwvS 138 6.02e+01 1rboC d.73.1.1 39662 1rypH 205 6.20e+01 d.153.1.4 41876 1wosA 364 6.20e+01 b.44.2.1,d.250.1.1 109468,109469 2ch0A 133 6.21e+01 1gwmA 153 6.21e+01 b.18.1.19 83348 3devA 320 6.28e+01 1t4hA 290 6.31e+01 d.144.1.7 106420 1zwyA 185 6.33e+01 c.51.4.3 125753 2qm4A 235 6.35e+01 2wczA 139 6.41e+01 2c1cA 312 6.50e+01 c.56.5.1 129630 1onqA 283 6.57e+01 b.1.1.2,d.19.1.1 93365,93366 2cirA 297 6.63e+01 3k9nA 166 6.65e+01 1gd7A 109 6.70e+01 b.40.4.4 60441 1jofA 365 6.75e+01 b.69.10.1 71775 2vapA 364 6.77e+01 c.32.1.1,d.79.2.1 152828,152829 2uubE 162 6.79e+01 d.14.1.1,d.50.1.2 139936,139937 1ds1A 324 6.79e+01 1drtA b.82.2.2 28127 1u55A 188 6.79e+01 d.278.1.1 107677 1fngA 192 6.80e+01 1iakA b.1.1.2,d.19.1.1 59904,59905 3bb7A 321 6.82e+01 2oy7A 320 6.83e+01 3fg7A 398 6.89e+01 2q3hA 201 6.91e+01 2vgpA 284 6.96e+01 1ieaA 192 7.06e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 2eisA 133 7.14e+01 2abyA 146 7.16e+01 3h7kA 383 7.30e+01 2eo0A 147 7.43e+01 3fbwA 299 7.43e+01 2cu2A 337 7.48e+01 b.81.4.1,c.68.1.20 146426,146427 3c0fB 91 7.49e+01 2i5tA 188 7.50e+01 2p5dA 147 7.51e+01 2vqeE 162 7.53e+01 i.1.1.3 153429 3cfzA 292 7.63e+01 1tigA 94 7.64e+01 d.68.1.1 39566 1vplA 256 7.65e+01 c.37.1.12 113966 2oxgA 108 7.65e+01 3lqaG 332 7.66e+01 2ce2X 166 7.69e+01 1kcvH 217 7.71e+01 b.1.1.1,b.1.1.2 72315,72316 2p67A 341 7.82e+01 c.37.1.10 149269 1t11A 392 7.89e+01 a.223.1.1,d.241.2.1,d.26.1.1 106236,106237,106238 2q9oA 559 7.93e+01 b.6.1.3,b.6.1.3,b.6.1.3 150149,150150,150151 3fucA 284 7.93e+01 1sjyA 159 7.96e+01 d.113.1.1 98900 2z1eA 342 7.96e+01 d.79.4.1,d.139.1.1 153932,153933