# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 1.60e-04 3hg0A 169 7.90e-01 3ejcA 169 1.01e+00 2f0cA 191 1.15e+00 b.21.1.3,b.108.1.4 132665,132666 1hh1A 143 1.42e+00 1gefA c.52.1.18 61036 1wcuA 153 2.49e+00 1y10A 407 4.31e+00 1vlmA 219 5.07e+00 c.66.1.41 108836 1cfyA 143 5.65e+00 1cof d.109.1.2 40858 2a8eA 220 9.84e+00 d.296.1.1 126397 3ehdA 162 1.11e+01 1y7pA 223 1.21e+01 c.23.1.7,d.58.18.12 122708,122709 1i1nA 226 1.22e+01 c.66.1.7 71102 1b5fA 239 1.37e+01 1smrA b.50.1.2 26836 2pbfA 227 1.46e+01 1wr2A 238 1.57e+01 1fzqA 181 1.59e+01 1hurA c.37.1.8 32060 3jxsA 174 1.62e+01 2dnrA 91 1.66e+01 1yc7A 124 1.73e+01 3cgxA 242 1.74e+01 1twfH 146 1.74e+01 b.40.4.8 112732 2wcwA 139 1.97e+01 3ff0A 163 2.22e+01 2wczA 139 2.26e+01 2uvpA 186 2.28e+01 2g0tA 350 2.28e+01 c.37.1.10 134499 2h17A 181 2.37e+01 2ifeA 100 2.45e+01 1tig d.68.1.1 39567 3k86A 185 2.60e+01 1nlqA 108 2.76e+01 b.121.3.1 85853 2kkuA 161 3.18e+01 3kg7A 293 3.21e+01 1jpcA 109 3.29e+01 b.78.1.1 27986 3g6zA 341 3.32e+01 2cf5A 357 3.40e+01 2gqcA 70 3.52e+01 1qppA 218 3.56e+01 1qpxA b.1.11.1,b.7.2.1 22320,23202 2eo0A 147 3.66e+01 3jv1A 182 3.84e+01 3fqgA 360 4.02e+01 1vs0A 310 4.05e+01 1fzyA 149 4.09e+01 d.20.1.1 65072 1r2jA 366 4.10e+01 a.29.3.1,e.6.1.1 96869,96870 2cdpA 160 4.15e+01 1t3bA 211 4.31e+01 c.47.1.9,d.17.3.1 106341,106342 1xtmA 175 4.47e+01 3k1wA 341 4.57e+01 2fp3A 316 4.57e+01 2hwzH 227 4.58e+01 1om1A 332 4.61e+01 d.144.1.7 93347 2f6rA 281 4.67e+01 2zjrG 174 4.68e+01 c.21.1.1 154560 1ry9A 145 4.68e+01 d.198.1.1 98094 1yzgA 179 4.70e+01 c.37.1.8 124276 1fvuB 125 4.72e+01 1ixxB d.169.1.1 42346 1wi1A 126 4.76e+01 b.55.1.1 114658 3e78A 403 5.03e+01 1kkeA 210 5.22e+01 b.83.1.2,b.21.1.2 68669,68670 3lfxA 319 5.40e+01 3hmiA 292 5.42e+01 3dkaA 155 5.47e+01 1m2rA 327 5.63e+01 d.144.1.7 84760 1xe0A 114 5.64e+01 b.121.3.1 115197 1hrnA 337 5.70e+01 1smrA b.50.1.2 26869 1vblA 416 5.78e+01 1u5xA 140 5.90e+01 b.22.1.1 113055 1s4iA 175 6.08e+01 1g8sA 230 6.11e+01 c.66.1.3 90507 2eisA 133 6.17e+01 2ai6A 125 6.27e+01 d.322.1.1 126818 1jfuA 186 6.35e+01 c.47.1.10 62940 3jumA 185 6.39e+01 3lwuA 391 6.40e+01 3a8jA 364 6.63e+01 2qf4A 172 6.72e+01 3fmcA 368 6.86e+01 1htrB 329 6.98e+01 1smrA 2vt3A 215 7.02e+01 1jkeA 145 7.18e+01 c.110.1.1 66791 2rerA 173 7.43e+01 d.129.3.6 151981 1xtlA 175 7.44e+01 1r0vA 305 7.46e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1xzwA 426 7.48e+01 b.1.12.1,d.159.1.1 116270,116271 1trbA 320 7.55e+01 c.3.1.5,c.3.1.5 30529,30530 3d8bA 357 7.65e+01 3f9uA 172 7.70e+01 1k42A 168 7.73e+01 b.18.1.14 72032 1r3eA 309 7.74e+01 b.122.1.1,d.265.1.2 96907,96908 2govA 195 7.75e+01 d.60.1.4 135447 2hnkA 239 7.75e+01 2vwgA 357 7.76e+01 2nmmA 135 7.78e+01 d.322.1.1 138372 2j5zA 221 7.86e+01 3ekiA 403 7.99e+01