Best Alignments for T0557

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3lmmA/T0557-3lmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3lmmA/T0557-3lmmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9067e-092.10e-36
1vlmA/T0557-1vlmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vlmA/T0557-1vlmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0751e+011.47e-09 c.66.1.41
1hh1A/T0557-1hh1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hh1A/T0557-1hh1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2914e+016.04e-06 1gefA c.52.1.18
1wcuA/T0557-1wcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wcuA/T0557-1wcuA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5539e+018.82e-03
1yzgA/T0557-1yzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yzgA/T0557-1yzgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6584e+011.54e-05 c.37.1.8
1skoB/T0557-1skoB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1skoB/T0557-1skoB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7858e+013.15e-10 d.110.7.1
2vapA/T0557-2vapA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2vapA/T0557-2vapA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8114e+012.05e-06 c.32.1.1
d.79.2.1
3gzaA/T0557-3gzaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3gzaA/T0557-3gzaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8549e+011.16e-12
1hw7A/T0557-1hw7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hw7A/T0557-1hw7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9027e+014.10e-08 1i7fA d.193.1.1
1zwyA/T0557-1zwyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zwyA/T0557-1zwyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9136e+016.13e-08 c.51.4.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001