# List of top-scoring protein chains for t04-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 2.39e-07 1lamA 484 1.09e+00 c.50.1.1,c.56.5.3 33166,33829 2oezA 247 1.59e+00 e.68.1.1 148758 1g8sA 230 1.75e+00 c.66.1.3 90507 1g8aA 227 2.30e+00 c.66.1.3 90506 1mzyA 333 2.76e+00 b.6.1.3,b.6.1.3 103848,103849 1yzgA 179 2.85e+00 c.37.1.8 124276 1r7mA 235 2.95e+00 d.95.2.1,d.95.2.1 111713,111714 1onqA 283 3.76e+00 b.1.1.2,d.19.1.1 93365,93366 2pqvA 154 4.20e+00 3a6sA 129 4.64e+00 2vhjA 331 4.71e+00 2cw9A 194 4.72e+00 d.17.4.13 130920 2bw4A 340 5.41e+00 b.6.1.3,b.6.1.3 129320,129321 3blzA 128 6.09e+00 d.17.4.14 155403 3duwA 223 6.44e+00 3c0wA 235 6.65e+00 3c0iA 351 6.72e+00 3fxtA 113 7.63e+00 3gzaA 443 7.94e+00 1imuA 107 8.24e+00 d.204.1.1 66218 2opeA 128 8.51e+00 3h4fA 336 8.76e+00 1x19A 359 8.87e+00 2ozvA 260 8.93e+00 2a1rA 430 9.07e+00 3kr4A 528 9.60e+00 2ppeA 343 9.60e+00 b.6.1.3,b.6.1.3 149769,149770 1yxaA 398 9.65e+00 1uzxA 169 9.80e+00 d.20.1.2 100238 3d9rA 135 1.00e+01 d.17.4.27 157459 3glaA 100 1.01e+01 2aznA 219 1.06e+01 c.71.1.2 127608 1hw7A 255 1.07e+01 1i7fA d.193.1.1 61297 3d36A 244 1.10e+01 1v5sA 126 1.16e+01 d.129.6.1 108384 3idbB 161 1.19e+01 2hc5A 117 1.20e+01 d.352.1.1 147255 3dxnA 287 1.20e+01 1pqzA 238 1.21e+01 b.1.1.2,d.19.1.1 104297,104298 2psbA 320 1.21e+01 c.153.1.1 149819 2j7tA 302 1.25e+01 1ass 159 1.26e+01 1a6dA 1assA 159 1.26e+01 c.8.5.2 30818 2welA 327 1.37e+01 2ipxA 233 1.39e+01 3cseA 227 1.40e+01 3dmgA 381 1.40e+01 2byoA 207 1.42e+01 b.125.1.3 129497 1snrA 341 1.43e+01 b.6.1.3,b.6.1.3 105823,105824 1vlmA 219 1.47e+01 c.66.1.41 108836 1zwyA 185 1.48e+01 c.51.4.3 125753 1zdsA 336 1.52e+01 b.6.1.3,b.6.1.3 124952,124953 1wz9A 375 1.55e+01 2wn6A 463 1.58e+01 2zigA 297 1.59e+01 2qg3A 208 1.61e+01 1xy7A 166 1.62e+01 d.32.1.9 116215 3f1sA 385 1.62e+01 1ib8A 164 1.67e+01 b.38.2.1,d.52.4.1 71168,71169 1i9zA 347 1.69e+01 1i9yA d.151.1.2 62102 2fug5 207 1.70e+01 3ebyA 163 1.74e+01 d.17.4.4 158087 1j9qA 341 1.77e+01 1nif b.6.1.3,b.6.1.3 62765,62766 2gq0A 303 1.79e+01 1ygtA 111 1.85e+01 2r3iA 298 1.87e+01 2a4xA 138 1.88e+01 d.32.1.2 126166 3g8yA 391 1.88e+01 3bevA 274 1.90e+01 2v95A 371 1.92e+01 1sjyA 159 1.92e+01 d.113.1.1 98900 2avdA 219 1.93e+01 c.66.1.1 127377 2q48A 166 1.97e+01 d.32.1.9 139829 3k6kA 322 1.98e+01 1z57A 339 1.98e+01 2dnrA 91 2.13e+01 1kcbA 340 2.21e+01 b.6.1.3,b.6.1.3 90951,90952 1zaiA 363 2.23e+01 c.1.10.1 124828 2qdfA 335 2.24e+01 2qg8A 163 2.25e+01 3ckwA 304 2.26e+01 1hl9A 449 2.30e+01 b.71.1.3,c.1.8.11 90650,90651 3dr5A 221 2.32e+01 1w44A 331 2.34e+01 c.37.1.11 114147 3iam5 207 2.34e+01 3hztA 467 2.36e+01 2a6tA 271 2.37e+01 a.242.1.1,d.113.1.7 126309,126310 2hi1A 330 2.37e+01 2q83A 346 2.37e+01 2rqkA 141 2.41e+01 1roaA 122 2.49e+01 d.17.1.2 105024 1sc0A 138 2.53e+01 d.38.1.5 98796 3fpqA 290 2.55e+01 2obfA 289 2.57e+01 3fhrA 336 2.69e+01 3eqeA 171 2.71e+01 1v2bA 177 2.71e+01 d.107.1.2 108279 2imjA 166 2.72e+01 d.17.4.23 147725 2ckfB 174 2.73e+01 2ae8A 221 2.76e+01 d.14.1.9,d.14.1.9 126604,126605 1iznA 286 2.76e+01 e.43.1.1 83847 2j3xA 431 2.79e+01 3b8dA 363 2.80e+01 c.1.10.1 154951 2akrA 285 2.81e+01 b.1.1.2,d.19.1.1 126931,126932 1gtdA 85 2.89e+01 d.284.1.1 76344 3d37A 381 2.93e+01 b.106.1.1,b.106.1.1 157269,157270 3greA 437 2.96e+01 2cfmA 561 2.97e+01 2h17A 181 3.00e+01 3m4xA 456 3.02e+01 1ieaB 228 3.02e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 3hceA 289 3.02e+01 3d79A 179 3.04e+01 3dmmA 275 3.08e+01 3citA 160 3.10e+01 3ikwA 374 3.10e+01 1adoA 363 3.14e+01 1fbaA c.1.10.1 29124 1h9dB 134 3.16e+01 2jhbA b.54.1.1 60822 3dxpA 359 3.16e+01 2c9jA 223 3.21e+01 2gbwB 174 3.24e+01 2bdwA 362 3.29e+01 1hnnA 282 3.32e+01 c.66.1.15 65895 3jstA 97 3.32e+01 1j3kC 328 3.34e+01 d.117.1.1 84072 1kllA 130 3.38e+01 d.32.1.2 72720 3ff0A 163 3.39e+01 2vqpA 257 3.40e+01 1o0iA 138 3.40e+01 d.38.1.5 86532 2retA 103 3.44e+01 d.24.1.7 151983 3a58A 320 3.49e+01 2kksA 146 3.51e+01 3fcdA 134 3.53e+01 3a35A 190 3.53e+01 1a6zA 275 3.53e+01 1agdA b.1.1.2,d.19.1.1 20781,38280 3e6fA 274 3.56e+01 3jumA 185 3.57e+01 2fikA 287 3.59e+01 b.1.1.2,d.19.1.1 133524,133525 2he7A 283 3.61e+01 2b6eA 146 3.63e+01 d.38.1.5 127986 3dnmA 336 3.64e+01 3kk8A 284 3.65e+01 1gz8A 299 3.68e+01 d.144.1.7 83405 3cwxA 176 3.71e+01 2it1A 362 3.72e+01 1sgoA 139 3.73e+01 d.82.3.1 98857 3hcaA 289 3.77e+01 2dr3A 247 3.77e+01 1o7nB 194 3.80e+01 d.17.4.4 81164 3bv4A 341 3.83e+01 2jbwA 386 3.89e+01 c.69.1.41 147962 1skoB 130 3.92e+01 d.110.7.1 105677 3fd5A 394 3.94e+01 2a14A 263 3.96e+01 c.66.1.15 125972 2ftsA 419 3.99e+01 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 3gldA 295 4.02e+01 1nb5I 98 4.02e+01 d.17.1.2 80381 3eysH 223 4.09e+01 2g72A 289 4.10e+01 c.66.1.15 134724 2carA 196 4.11e+01 c.51.4.1 130161 2f8lA 344 4.11e+01 c.66.1.45 133132 3lmlA 460 4.12e+01 3b42A 135 4.15e+01 2omdA 154 4.16e+01 3cnmA 185 4.20e+01 3iabB 140 4.21e+01 3a0yA 152 4.21e+01 1usuA 260 4.22e+01 d.14.1.8 99885 1i8aA 189 4.24e+01 1i82A b.1.9.2 61951 1fzyA 149 4.26e+01 d.20.1.1 65072 3f61A 311 4.28e+01 2qu8A 228 4.30e+01 2pnwA 380 4.35e+01 b.52.1.4 149707 1u14A 172 4.36e+01 c.51.4.3 107579 1u58A 253 4.41e+01 b.1.1.2,d.19.1.1 144387,144388 3bq9A 460 4.41e+01 1q0sA 259 4.41e+01 c.66.1.28 95509 2hnkA 239 4.43e+01 3e23A 211 4.43e+01 3gdhA 241 4.50e+01 3cnxA 170 4.57e+01 d.17.4.17 156850 2qagB 427 4.57e+01 2a22A 215 4.70e+01 d.159.1.7 126025 2ahdA 165 4.70e+01 d.159.1.7 126752 1kjvA 284 4.73e+01 b.1.1.2,d.19.1.1 77421,77422 2dy1A 665 4.80e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 146607,146608,146609,146610,146611 1jj2L 194 4.84e+01 1ffkI d.12.1.2 63097 3gokA 334 4.84e+01 2imqX 282 4.86e+01 d.151.1.2 147733 2gu3A 136 4.86e+01 d.17.1.6,d.17.1.6 147178,147179 2vapA 364 4.87e+01 c.32.1.1,d.79.2.1 152828,152829 1giqA 413 4.88e+01 d.166.1.1,d.166.1.1 76224,76225 3f44A 220 4.92e+01 1t9xA 1049 5.01e+01 3igfA 374 5.02e+01 1uvqB 198 5.05e+01 b.1.1.2,d.19.1.1 100064,100065 2geyA 158 5.06e+01 d.17.4.9 147114 3gwrA 144 5.09e+01 2hjeA 221 5.12e+01 d.110.6.3 147294 1hqkA 154 5.18e+01 c.16.1.1 65902 3jtwA 178 5.18e+01 2pa4A 323 5.19e+01 1ooeA 236 5.22e+01 c.2.1.2 87196 1oc0A 379 5.25e+01 e.1.1.1 86790 2a7lA 136 5.26e+01 d.20.1.1 126350 2r41A 110 5.29e+01 3f7sA 142 5.31e+01 1ydeA 270 5.33e+01 c.2.1.2 122980 3e6hA 275 5.35e+01 3fspA 369 5.36e+01 1vd3A 217 5.44e+01 2k5rA 97 5.50e+01 1jmsA 381 5.52e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 2arrA 382 5.58e+01 2d4gA 171 5.63e+01 2jdjA 105 5.65e+01 3hnrA 220 5.69e+01 2pusA 852 5.69e+01 1jwiB 125 5.70e+01 d.169.1.1 67384 2wbmA 252 5.72e+01 1xppA 115 5.77e+01 d.74.3.2 115768 2qsrA 173 5.79e+01 1iqqA 200 5.82e+01 d.124.1.1 66274 1evxA 162 5.83e+01 1a73A d.4.1.3 37149 1xl4A 301 5.85e+01 b.1.18.16,f.14.1.1 115430,115431 1k6zA 141 5.86e+01 d.198.1.1 68247 2za0A 184 5.88e+01 1rgxA 114 5.89e+01 g.77.1.1 104932 3c0kA 396 5.93e+01 2a15A 139 6.02e+01 d.17.4.3 125973 1zs7A 190 6.04e+01 b.122.1.1,d.17.6.4 125593,125594 1dixA 208 6.05e+01 1bk7A d.124.1.1 41122 2fujA 137 6.06e+01 d.38.1.1 134175 3iayA 919 6.08e+01 2cw2A 226 6.09e+01 1y10A 407 6.10e+01 2bmoB 194 6.12e+01 d.17.4.4 128806 2nrkA 173 6.13e+01 d.218.1.14 148379 3a1zA 227 6.18e+01 1zjaA 557 6.19e+01 1q7lA 198 6.25e+01 c.56.5.4 96044 1ujrA 110 6.28e+01 d.289.1.1 113258 1go3E 187 6.29e+01 b.40.4.5,d.230.1.1 83054,83055 2iuyA 342 6.33e+01 1vmkA 277 6.37e+01 c.56.2.1 113680 3mesA 424 6.39e+01 2wn4A 463 6.42e+01 1bwvS 138 6.47e+01 1rboC d.73.1.1 39662 2ig7A 401 6.49e+01 3dkuA 153 6.49e+01 3ls8A 614 6.50e+01 3c0dA 119 6.57e+01 b.33.1.3 155819 3h0dA 155 6.58e+01 2q3sA 206 6.60e+01 c.55.3.5 139802 1p7gA 222 6.60e+01 a.2.11.1,d.44.1.1 94223,94224 3fgqA 397 6.63e+01 1oe1A 336 6.64e+01 b.6.1.3,b.6.1.3 86891,86892 2dtxA 264 6.69e+01 2px6A 316 6.74e+01 1lo7A 141 6.76e+01 d.38.1.1 74144 1idpA 172 6.77e+01 d.17.4.1 83685 1y44A 320 6.78e+01 d.157.1.7 122608 2iihA 157 6.81e+01 2o6pA 161 6.83e+01 b.1.28.1 148635 1sb2A 133 6.94e+01 d.169.1.1 118927 1zd3A 555 6.97e+01 c.108.1.2,c.69.1.11 124930,124931 1iybA 208 6.99e+01 d.124.1.1 90720 2uvpA 186 6.99e+01 1eg9B 194 7.05e+01 1ndoB d.17.4.4 38120 2po1B 277 7.10e+01 2qmaA 497 7.11e+01 1vqoM 195 7.17e+01 d.12.1.2 120374 3laeA 81 7.18e+01 2nncA 124 7.22e+01 1r31A 428 7.24e+01 d.58.20.1,d.179.1.1 96897,96898 1lq9A 112 7.25e+01 d.58.4.3 78129 1n9pA 207 7.25e+01 b.1.18.16 80343 3ihyA 600 7.25e+01 2vdxA 373 7.26e+01 2a5dA 175 7.27e+01 c.37.1.8 126172 3fhfA 214 7.31e+01 2vdrB 461 7.36e+01 1r89A 437 7.39e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 2cx1A 187 7.45e+01 b.122.1.1,d.17.6.4 130967,130968 3gwmA 129 7.46e+01 3kgyA 231 7.46e+01 3lk41 286 7.48e+01 2hekA 371 7.48e+01 a.211.1.1 136354 2qyzA 139 7.56e+01 1si6X 282 7.56e+01 d.151.1.2 118968 2hw6A 307 7.57e+01 2v4nA 254 7.59e+01 2ogfA 122 7.59e+01 2k54A 123 7.61e+01 d.17.4.29 148271 1dcoA 104 7.64e+01 1dcpA d.74.1.1 39680 3ecbA 277 7.68e+01 3brbA 313 7.70e+01 1zhsA 113 7.70e+01 2zxdA 455 7.76e+01 2wpxA 339 7.88e+01