# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 1.12e-07 1wcuA 153 2.84e+00 3a7iA 303 3.72e+00 3fspA 369 3.78e+00 3ckwA 304 4.54e+00 1x9nA 688 5.11e+00 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1v10A 521 5.69e+00 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2wg5A 109 7.58e+00 3blzA 128 7.95e+00 d.17.4.14 155403 1zwyA 185 8.00e+00 c.51.4.3 125753 1mkyA 439 9.07e+00 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3efyA 195 9.88e+00 1hl9A 449 1.02e+01 b.71.1.3,c.1.8.11 90650,90651 2q4zA 312 1.05e+01 1iz0A 302 1.21e+01 b.35.1.2,c.2.1.1 83821,83822 3fpqA 290 1.28e+01 1g79A 218 1.30e+01 1ci0A b.45.1.1 25752 2j7tA 302 1.34e+01 2vfxA 206 1.39e+01 2gu2A 312 1.41e+01 c.56.5.7 147177 3hw5A 261 1.53e+01 1f6bA 198 1.76e+01 c.37.1.8 64986 3fhrA 336 1.76e+01 1hw7A 255 1.81e+01 1i7fA d.193.1.1 61297 1bwvS 138 1.96e+01 1rboC d.73.1.1 39662 3cnmA 185 2.00e+01 3cptB 131 2.04e+01 2cfmA 561 2.05e+01 1u59A 287 2.08e+01 d.144.1.7 107681 3hmiA 292 2.15e+01 1t4hA 290 2.16e+01 d.144.1.7 106420 2wgoA 98 2.21e+01 3ke7A 134 2.33e+01 1yzgA 179 2.33e+01 c.37.1.8 124276 1skoB 130 2.43e+01 d.110.7.1 105677 3hztA 467 2.50e+01 1onqA 283 2.57e+01 b.1.1.2,d.19.1.1 93365,93366 2vapA 364 2.60e+01 c.32.1.1,d.79.2.1 152828,152829 1zc1A 208 2.63e+01 2vu6A 207 2.63e+01 2qzbA 166 2.78e+01 2wg6A 109 2.79e+01 1evxA 162 2.81e+01 1a73A d.4.1.3 37149 1wi5A 119 2.99e+01 b.40.4.5 114661 1aisA 182 3.14e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1xeeA 91 3.27e+01 3l2nA 395 3.30e+01 2blrA 206 3.37e+01 b.25.1.1 128741 2vhkA 206 3.37e+01 2r0hA 164 3.47e+01 1vmkA 277 3.59e+01 c.56.2.1 113680 2pnqA 467 3.64e+01 3duwA 223 3.87e+01 2gk9A 426 3.89e+01 1t23A 93 3.92e+01 d.247.1.1 112216 2zxdA 455 3.94e+01 2w69A 216 3.97e+01 1ds1A 324 4.02e+01 1drtA b.82.2.2 28127 3c5jA 181 4.18e+01 1go4A 205 4.23e+01 d.135.1.1 70292 1v70A 105 4.25e+01 b.82.1.9 113555 1gycA 499 4.28e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1y44A 320 4.35e+01 d.157.1.7 122608 1hh1A 143 4.45e+01 1gefA c.52.1.18 61036 1kwnA 207 4.47e+01 b.25.1.1 77568 3lv0A 267 4.50e+01 3kk7A 541 4.52e+01 3jumA 185 4.59e+01 1rqwA 207 4.60e+01 b.25.1.1 97781 1fngA 192 4.70e+01 1iakA b.1.1.2,d.19.1.1 59904,59905 2e5vA 472 4.70e+01 2gwmA 200 4.71e+01 1kshA 186 4.71e+01 c.37.1.8 72914 1vetB 125 4.72e+01 d.110.7.1 108554 2p02A 396 4.84e+01 d.130.1.1,d.130.1.1,d.130.1.1 149132,149133,149134 2go8A 122 4.93e+01 d.58.4.5 147144 2bgoA 140 4.95e+01 2v64D 207 5.02e+01 2avdA 219 5.03e+01 c.66.1.1 127377 1x31B 404 5.07e+01 1u14A 172 5.15e+01 c.51.4.3 107579 2gagB 405 5.33e+01 2ej8A 160 5.44e+01 2qkmB 266 5.48e+01 1t11A 392 5.55e+01 a.223.1.1,d.241.2.1,d.26.1.1 106236,106237,106238 2d74B 148 5.61e+01 2a2jA 246 5.65e+01 b.45.1.1 126033 2elaA 175 5.66e+01 1ieaA 192 5.68e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 3fcmA 197 5.70e+01 2a6tA 271 5.70e+01 a.242.1.1,d.113.1.7 126309,126310 3c4zA 543 5.85e+01 3a58A 320 6.05e+01 2wxuA 370 6.07e+01 3gokA 334 6.07e+01 1r7mA 235 6.20e+01 d.95.2.1,d.95.2.1 111713,111714 1fjgJ 105 6.21e+01 1fjfJ d.58.15.1 39330 1r9lA 309 6.24e+01 c.94.1.1 97262 3c0dA 119 6.27e+01 b.33.1.3 155819 2ch0A 133 6.31e+01 2ae8A 221 6.38e+01 d.14.1.9,d.14.1.9 126604,126605 3h43A 85 6.40e+01 2gysA 419 6.43e+01 b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1 135865,135866,135867,135868 1ieaB 228 6.45e+01 1iakB b.1.1.2,d.19.1.1 21632,38206 1qm4A 396 6.50e+01 1mxb d.130.1.1,d.130.1.1,d.130.1.1 41350,41351,41352 3dlaA 680 6.52e+01 3jslA 318 6.56e+01 1sjyA 159 6.65e+01 d.113.1.1 98900 1gcb 454 6.68e+01 3gcb 1vraA 208 6.70e+01 2uubJ 105 6.70e+01 d.58.15.1 139941 2zjrG 174 6.79e+01 c.21.1.1 154560 1obrA 326 6.84e+01 c.56.5.2 33828 3gcbA 470 6.87e+01 d.3.1.1 37032 1z57A 339 6.90e+01 3ff0A 163 7.08e+01 2c27A 315 7.11e+01 d.108.1.1 129659 1xodA 118 7.16e+01 b.55.1.4 122202 2isnA 364 7.18e+01 1ln1A 214 7.18e+01 d.129.3.2 74038 3lijA 494 7.30e+01 3a0oA 776 7.31e+01 2bklA 695 7.32e+01 2rexA 121 7.35e+01 1hfuA 503 7.35e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1gwmA 153 7.39e+01 b.18.1.19 83348 1vlmA 219 7.44e+01 c.66.1.41 108836 2fk6A 320 7.45e+01 d.157.1.7 133646 2abyA 146 7.49e+01 1p3jA 217 7.59e+01 c.37.1.1,g.41.2.1 94022,94023 3dxnA 287 7.59e+01 1fzyA 149 7.62e+01 d.20.1.1 65072 3d36A 244 7.83e+01 2govA 195 7.87e+01 d.60.1.4 135447