# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 5.86e-08 1x9nA 688 3.20e+00 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 1wcuA 153 3.47e+00 2zjrG 174 7.82e+00 c.21.1.1 154560 2pnqA 467 8.20e+00 3ckwA 304 8.46e+00 2gwmA 200 9.03e+00 1zwyA 185 9.14e+00 c.51.4.3 125753 2vapA 364 9.87e+00 c.32.1.1,d.79.2.1 152828,152829 1ru8A 232 1.07e+01 c.26.2.1 97849 1yzgA 179 1.12e+01 c.37.1.8 124276 3lp8A 442 1.25e+01 1mkyA 439 1.25e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 3blzA 128 1.26e+01 d.17.4.14 155403 2zxdA 455 1.45e+01 2q4zA 312 1.46e+01 3a7iA 303 1.54e+01 1hl9A 449 1.75e+01 b.71.1.3,c.1.8.11 90650,90651 3cptB 131 1.85e+01 2hbtA 247 2.06e+01 1wi5A 119 2.07e+01 b.40.4.5 114661 2gu2A 312 2.09e+01 c.56.5.7 147177 3fhrA 336 2.17e+01 1skoB 130 2.19e+01 d.110.7.1 105677 2eu8A 216 2.21e+01 2go8A 122 2.46e+01 d.58.4.5 147144 3hw5A 261 2.47e+01 1t9mA 214 2.47e+01 b.45.1.1 112364 1gycA 499 2.58e+01 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 1xocA 520 2.59e+01 c.94.1.1 122201 3jumA 185 2.62e+01 3dl0A 216 2.62e+01 2wgoA 98 2.69e+01 3ke7A 134 2.72e+01 3ff0A 163 2.82e+01 3cnmA 185 2.82e+01 3d36A 244 2.89e+01 3fqgA 360 2.94e+01 1bwvS 138 2.95e+01 1rboC d.73.1.1 39662 2fk6A 320 3.04e+01 d.157.1.7 133646 3efyA 195 3.23e+01 3l2nA 395 3.29e+01 1evxA 162 3.39e+01 1a73A d.4.1.3 37149 1xeeA 91 3.39e+01 1vetB 125 3.47e+01 d.110.7.1 108554 2chcA 170 3.47e+01 d.17.4.25 146394 2wg5A 109 3.53e+01 1kshA 186 3.57e+01 c.37.1.8 72914 1vmkA 277 3.65e+01 c.56.2.1 113680 2g19A 244 3.68e+01 2fbeA 201 3.71e+01 b.29.1.22 133241 1p3jA 217 3.97e+01 c.37.1.1,g.41.2.1 94022,94023 3fpqA 290 3.98e+01 1hkxA 147 3.99e+01 d.17.4.7 83567 1g79A 218 4.39e+01 1ci0A b.45.1.1 25752 1y8cA 246 4.54e+01 c.66.1.43 116563 1v10A 521 4.58e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1bg2A 325 4.58e+01 c.37.1.9 32189 1ds1A 324 4.60e+01 1drtA b.82.2.2 28127 2a2jA 246 4.65e+01 b.45.1.1 126033 2rfrA 155 4.83e+01 d.17.4.28 152000 1u14A 172 4.86e+01 c.51.4.3 107579 1u59A 287 4.96e+01 d.144.1.7 107681 3mgdA 157 4.98e+01 3jslA 318 5.14e+01 3fspA 369 5.14e+01 1p4xA 250 5.14e+01 a.4.5.28,a.4.5.28 87784,87785 1vlmA 219 5.16e+01 c.66.1.41 108836 2qqzA 126 5.57e+01 2nsqA 155 5.62e+01 1hh1A 143 5.67e+01 1gefA c.52.1.18 61036 2jbwA 386 5.68e+01 c.69.1.41 147962 3h7eA 237 5.79e+01 2w69A 216 5.84e+01 2p86A 215 5.88e+01 1pqzA 238 5.95e+01 b.1.1.2,d.19.1.1 104297,104298 1v7rA 186 5.96e+01 c.51.4.1 100482 1v70A 105 6.01e+01 b.82.1.9 113555 1yizA 429 6.08e+01 c.67.1.1 123375 2vhkA 206 6.37e+01 1kwnA 207 6.69e+01 b.25.1.1 77568 2vu6A 207 6.69e+01 2r41A 110 6.69e+01 2blrA 206 6.69e+01 b.25.1.1 128741 1p9bA 442 6.70e+01 c.37.1.10 94385 2wc5A 142 6.72e+01 2hhpA 530 6.75e+01 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 1wvqA 167 6.76e+01 2eo0A 147 6.79e+01 2j7tA 302 6.86e+01 2ux0A 143 6.93e+01 d.17.4.7 152231 1t4hA 290 7.11e+01 d.144.1.7 106420 2og5A 357 7.16e+01 1r9lA 309 7.24e+01 c.94.1.1 97262 2mbrA 340 7.42e+01 d.145.1.2,d.146.1.1 41749,41762 3a0oA 776 7.48e+01 1zc1A 208 7.59e+01 1uxy 340 7.68e+01 2mbr 1uxyA 340 7.68e+01 d.145.1.2,d.146.1.1 41748,41761 1y44A 320 7.72e+01 d.157.1.7 122608 2q66A 525 7.75e+01 a.160.1.1,d.218.1.3,d.58.16.1 150057,150058,150059 3dgeA 258 7.76e+01 1fa0A 537 7.78e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1dnlA 199 7.88e+01 1ci0A b.45.1.1 25753 1t23A 93 7.93e+01 d.247.1.1 112216 3f44A 220 7.99e+01