# List of top-scoring protein chains for t04-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 2.21e-06 3fqgA 360 2.52e+00 1hh1A 143 3.41e+00 1gefA c.52.1.18 61036 1f6bA 198 4.12e+00 c.37.1.8 64986 1yzgA 179 4.52e+00 c.37.1.8 124276 1hw7A 255 5.44e+00 1i7fA d.193.1.1 61297 1wcuA 153 6.47e+00 2eo0A 147 6.48e+00 1y8cA 246 6.52e+00 c.66.1.43 116563 1gycA 499 6.65e+00 b.6.1.3,b.6.1.3,b.6.1.3 70748,70749,70750 3blzA 128 7.08e+00 d.17.4.14 155403 1v10A 521 7.33e+00 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2zo4A 317 8.14e+00 1kshA 186 8.32e+00 c.37.1.8 72914 2dtjA 178 8.48e+00 3a7iA 303 9.23e+00 1hz6A 72 9.34e+00 2ptl d.15.7.1 61429 2q66A 525 9.77e+00 a.160.1.1,d.218.1.3,d.58.16.1 150057,150058,150059 1evxA 162 1.01e+01 1a73A d.4.1.3 37149 1k78A 149 1.06e+01 a.4.1.5,a.4.1.5 68255,68256 2dxqA 150 1.09e+01 1gskA 513 1.13e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 2wbmA 252 1.14e+01 2ek0A 90 1.15e+01 1fa0A 537 1.22e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 2h17A 181 1.34e+01 3ejxA 317 1.36e+01 1uedA 406 1.42e+01 a.104.1.1 99256 2hhpA 530 1.58e+01 a.160.1.1,d.218.1.3,d.58.16.1 136503,136504,136505 1g9mG 321 1.61e+01 1gc1G d.172.1.1 42492 2jbwA 386 1.65e+01 c.69.1.41 147962 3lqaG 332 1.67e+01 3h0dA 155 1.81e+01 2pnqA 467 1.84e+01 2wp3T 102 1.85e+01 3d36A 244 1.85e+01 1eysH 259 1.96e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 1vmkA 277 1.99e+01 c.56.2.1 113680 2veaA 520 2.03e+01 d.110.2.1,d.110.2.4,d.110.3.9 153022,153023,153024 3i0yA 140 2.07e+01 3fhrA 336 2.09e+01 2c2aA 258 2.12e+01 a.30.2.1,d.122.1.3 129662,129663 1zj6A 187 2.14e+01 c.37.1.8 125145 3htvA 310 2.15e+01 2b0vA 153 2.20e+01 d.113.1.1 127650 2zbcA 83 2.21e+01 3ckwA 304 2.29e+01 2qzbA 166 2.31e+01 1vlmA 219 2.61e+01 c.66.1.41 108836 1qw2A 102 2.71e+01 d.249.1.1 96456 1wd3A 482 2.77e+01 b.29.1.21,b.42.8.1 109233,109234 1khyA 148 2.78e+01 a.174.1.1 77410 2zpmA 91 2.84e+01 1whnA 128 2.84e+01 d.50.1.1 114648 1hkxA 147 2.85e+01 d.17.4.7 83567 3czbA 351 2.86e+01 1vkdA 338 2.87e+01 b.67.2.4 108644 1dgfA 497 2.90e+01 1cf9A e.5.1.1 42782 2v7pA 310 2.95e+01 1pf5A 131 2.97e+01 d.79.1.1 94604 3kw7A 502 2.99e+01 3dgeA 258 3.02e+01 1mkyA 439 3.06e+01 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2vapA 364 3.08e+01 c.32.1.1,d.79.2.1 152828,152829 1rz3A 201 3.26e+01 c.37.1.6 98132 2v64D 207 3.26e+01 1ocvA 125 3.36e+01 d.17.4.3 86810 2e6cA 244 3.50e+01 2zigA 297 3.53e+01 1ygtA 111 3.59e+01 1m2rA 327 3.59e+01 d.144.1.7 84760 1yymG 313 3.67e+01 d.172.1.1 124232 2kc5A 162 3.69e+01 3c0dA 119 3.70e+01 b.33.1.3 155819 3knbA 100 3.70e+01 2z0tA 109 3.74e+01 1rzjG 321 3.75e+01 d.172.1.1 98200 2jrbA 88 3.78e+01 1zc1A 208 3.90e+01 2govA 195 3.99e+01 d.60.1.4 135447 1ituA 369 3.99e+01 c.1.9.7 71423 2ggoA 401 4.05e+01 2zxdA 455 4.19e+01 3gokA 334 4.26e+01 1hl9A 449 4.32e+01 b.71.1.3,c.1.8.11 90650,90651 3g9xA 299 4.34e+01 3efyA 195 4.37e+01 1u55A 188 4.41e+01 d.278.1.1 107677 1onqA 283 4.41e+01 b.1.1.2,d.19.1.1 93365,93366 1o97D 320 4.61e+01 c.26.2.3,c.31.1.2 81233,81234 3efbA 266 4.65e+01 c.124.1.8 158129 2aznA 219 4.69e+01 c.71.1.2 127608 1ohpA 125 4.70e+01 d.17.4.3 118702 3fwhA 299 4.77e+01 1iybA 208 4.80e+01 d.124.1.1 90720 2gr8A 99 4.81e+01 d.24.1.4 135522 1wmhB 86 4.83e+01 d.15.2.2 114745 2gebA 185 4.88e+01 2bshA 125 4.96e+01 2c8sA 172 4.97e+01 a.3.1.1 130123 1zysA 273 5.00e+01 1fnoA 417 5.05e+01 d.58.19.1,c.56.5.4 70145,75841 3ijdA 315 5.06e+01 2wczA 139 5.09e+01 1o0wA 252 5.17e+01 a.149.1.1,d.50.1.1 80751,80752 1ummA 172 5.20e+01 1om4A 422 5.21e+01 d.174.1.1 87067 3lahA 188 5.23e+01 2oxgA 108 5.24e+01 1y7tA 327 5.26e+01 c.2.1.5,d.162.1.1 122718,122719 2oe3A 114 5.29e+01 2wcwA 139 5.35e+01 2go8A 122 5.39e+01 d.58.4.5 147144 1b8mA 119 5.40e+01 1bndA g.17.1.3 44797 3irgA 100 5.43e+01 3h1qA 272 5.44e+01 1r7mA 235 5.49e+01 d.95.2.1,d.95.2.1 111713,111714 3id3A 89 5.53e+01 3id4A 93 5.57e+01 3a0yA 152 5.61e+01 1wloA 136 5.64e+01 2r751 338 5.66e+01 1uvqB 198 5.67e+01 b.1.1.2,d.19.1.1 100064,100065 1gz8A 299 5.79e+01 d.144.1.7 83405 2q14A 410 5.80e+01 2q73A 100 5.90e+01 2nsqA 155 5.90e+01 1bdmA 327 5.92e+01 1bmdA c.2.1.5,d.162.1.1 30137,42104 1mvfD 82 5.94e+01 b.129.1.1 85143 1skoB 130 6.00e+01 d.110.7.1 105677 1uf3A 228 6.02e+01 d.159.1.6 99317 1j7jA 178 6.05e+01 c.61.1.1 84131 1fzyA 149 6.08e+01 d.20.1.1 65072 1b8kA 119 6.10e+01 1bndA g.17.1.3 44795 2d7nA 93 6.13e+01 b.1.18.10 131322 3ec3A 250 6.14e+01 2cxcA 144 6.20e+01 1itvA 195 6.22e+01 b.66.1.1 76791 1szwA 379 6.24e+01 d.265.1.4 99047 1v2bA 177 6.26e+01 d.107.1.2 108279 2ny1A 317 6.30e+01 d.172.1.1 145703 1p30A 952 6.34e+01 b.121.2.2,b.121.2.2 93964,93965 3m2oA 164 6.44e+01 1j3kC 328 6.50e+01 d.117.1.1 84072 1ei1A 391 6.62e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 3lm3A 449 6.64e+01 2r77A 205 6.72e+01 3gkkA 163 6.79e+01 1ln1A 214 6.80e+01 d.129.3.2 74038 2avdA 219 6.83e+01 c.66.1.1 127377 1dhrA 241 6.87e+01 c.2.1.2 29832 3borA 237 7.00e+01 3m05A 114 7.00e+01 1j3bA 529 7.00e+01 c.91.1.1,c.109.1.1 77071,77072 1l6sA 323 7.03e+01 c.1.10.3 73627 3c8cA 240 7.08e+01 1g79A 218 7.09e+01 1ci0A b.45.1.1 25752 2gj8A 172 7.11e+01 c.37.1.8 135270 2j7tA 302 7.13e+01 3h2iA 397 7.21e+01 1x9nA 688 7.23e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 2p6hA 134 7.25e+01 3mgdA 157 7.30e+01 2i6vA 87 7.34e+01 b.36.1.5 147530 1p9bA 442 7.40e+01 c.37.1.10 94385 3lk41 286 7.44e+01 2wq4A 156 7.54e+01 3id2A 90 7.59e+01 1o91A 178 7.61e+01 b.22.1.1 92656 1wlfA 179 7.68e+01 d.31.1.1,b.52.2.3 109396,109397 2tpt 440 7.68e+01 1brwA 3c0wA 235 7.76e+01 2qkmB 266 7.76e+01 2hhcA 330 7.90e+01 2jfrA 234 7.92e+01 1vr4A 103 7.92e+01 d.230.5.1 120432 1dixA 208 7.95e+01 1bk7A d.124.1.1 41122 1th8A 145 7.98e+01 d.122.1.3 106908 3kr6A 419 7.99e+01