# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 5.28e-08 1y10A 407 6.65e-01 1wcuA 153 2.46e+00 3h0dA 155 3.14e+00 2x1fA 96 4.49e+00 2ejeA 114 5.23e+00 1lamA 484 5.28e+00 c.50.1.1,c.56.5.3 33166,33829 2zjrG 174 5.84e+00 c.21.1.1 154560 3b7eA 385 6.30e+00 1vlmA 219 6.59e+00 c.66.1.41 108836 1hh1A 143 7.05e+00 1gefA c.52.1.18 61036 2ipxA 233 8.67e+00 3cyeA 387 9.23e+00 2r0hA 164 9.99e+00 2vt8A 153 1.01e+01 4gcr 174 1.08e+01 1amm 3beqA 385 1.10e+01 2g0tA 350 1.15e+01 c.37.1.10 134499 1dixA 208 1.18e+01 1bk7A d.124.1.1 41122 1iybA 208 1.23e+01 d.124.1.1 90720 3fspA 369 1.29e+01 3gldA 295 1.35e+01 3fhfA 214 1.38e+01 1g8sA 230 1.42e+01 c.66.1.3 90507 1vs0A 310 1.62e+01 1ammA 174 1.67e+01 b.11.1.1,b.11.1.1 23587,23588 1xdpA 687 1.76e+01 a.7.15.1,d.322.1.2,d.136.1.4,d.136.1.4 121896,121897,121898,121899 2gu2A 312 1.94e+01 c.56.5.7 147177 2vapA 364 2.00e+01 c.32.1.1,d.79.2.1 152828,152829 2omdA 154 2.09e+01 2q4zA 312 2.11e+01 2hi1A 330 2.13e+01 1y8cA 246 2.15e+01 c.66.1.43 116563 2p67A 341 2.15e+01 c.37.1.10 149269 1vd3A 217 2.16e+01 3jxsA 174 2.20e+01 1gtzA 156 2.31e+01 c.23.13.1 70539 3gleA 295 2.35e+01 2wxuA 370 2.46e+01 3b2mA 295 2.53e+01 3f13A 163 2.57e+01 3e78A 403 2.63e+01 2v95A 371 2.64e+01 1smoA 119 2.74e+01 b.1.1.1 105764 3dzbA 317 2.77e+01 1zirA 173 2.86e+01 b.11.1.1,b.11.1.1 125126,125127 3jygA 188 2.90e+01 2h17A 181 2.94e+01 2opeA 128 3.02e+01 2f6rA 281 3.25e+01 2kkuA 161 3.42e+01 1ul7A 102 3.49e+01 d.129.6.1 99540 3jv1A 182 3.55e+01 3ejcA 169 3.72e+01 1r2jA 366 3.80e+01 a.29.3.1,e.6.1.1 96869,96870 1wz9A 375 3.82e+01 2ozvA 260 4.03e+01 3lmbA 165 4.23e+01 3ijdA 315 4.26e+01 1g8aA 227 4.26e+01 c.66.1.3 90506 2zvyA 183 4.48e+01 2pbfA 227 4.51e+01 1t3lA 337 4.59e+01 b.34.2.1,c.37.1.1 106358,106359 3ekiA 403 4.59e+01 3cgxA 242 4.60e+01 1sdsA 117 4.63e+01 d.79.3.1 105439 1u5xA 140 4.79e+01 b.22.1.1 113055 2dnrA 91 4.83e+01 1y1lA 124 4.98e+01 c.44.1.1 116341 1wucA 250 5.02e+01 3cwxA 176 5.05e+01 1p4pA 145 5.18e+01 b.76.1.1 94112 1khyA 148 5.28e+01 a.174.1.1 77410 3cc6A 281 5.30e+01 3ctkA 248 5.34e+01 d.165.1.1 156985 2w87A 139 5.37e+01 2ez9A 603 5.50e+01 c.31.1.3,c.36.1.5,c.36.1.9 132627,132628,132629 3f44A 220 5.53e+01 3i2nA 357 5.55e+01 2zovA 210 5.56e+01 1h9dB 134 5.58e+01 2jhbA b.54.1.1 60822 2pthA 193 5.66e+01 c.56.3.1 33793 1oc0A 379 5.70e+01 e.1.1.1 86790 1wmzA 140 5.76e+01 d.169.1.1 109422 2arkA 188 5.82e+01 c.23.5.8 127202 2ex0A 399 5.93e+01 c.87.1.9 132494 1grx 85 5.97e+01 1kte 1whnA 128 5.99e+01 d.50.1.1 114648 3hg0A 169 6.17e+01 3dxnA 287 6.24e+01 1wgpA 137 6.30e+01 b.82.3.2 114619 2d4gA 171 6.36e+01 1d0iA 156 6.39e+01 2dhqA c.23.13.1 31383 1wlfA 179 6.39e+01 d.31.1.1,b.52.2.3 109396,109397 3g0qA 352 6.48e+01 2pr1A 163 6.52e+01 3b85A 208 6.60e+01 2a8eA 220 6.60e+01 d.296.1.1 126397 1vqzA 341 6.64e+01 d.224.1.3,d.104.1.3 120426,120427 1n3bA 216 6.68e+01 c.37.1.1 79959 1w7bA 339 6.68e+01 a.65.1.1 114317 2wkbA 125 6.74e+01 1yzgA 179 6.76e+01 c.37.1.8 124276 3ckzA 385 6.81e+01 1x9nA 688 6.83e+01 a.235.1.1,b.40.4.6,d.142.2.1 115002,115003,115004 2z0tA 109 6.85e+01 2iabA 155 6.88e+01 2pvfA 334 6.89e+01 1of5A 221 6.90e+01 d.17.4.2 86933 1xbiA 120 6.91e+01 d.79.3.1 121840 2ogfA 122 6.91e+01 2wcwA 139 7.06e+01 2yzyA 200 7.10e+01 3a58A 320 7.12e+01 1tyhA 248 7.15e+01 a.132.1.3 107458 3kjtA 372 7.25e+01 1wv2A 265 7.34e+01 c.1.31.1 114910 3a6sA 129 7.42e+01 1m8uA 173 7.43e+01 b.11.1.1,b.11.1.1 91233,91234 2j67A 178 7.46e+01 1l1jA 239 7.49e+01 b.47.1.1 84516 1ca1A 370 7.69e+01 a.124.1.1,b.12.1.3 19340,23648 3ixqA 226 7.75e+01 2pjmA 226 7.77e+01 1h6fA 193 7.79e+01 b.2.5.4 70901 3a57A 165 7.85e+01 1sc0A 138 7.89e+01 d.38.1.5 98796 3c2gA 619 7.91e+01