# List of top-scoring protein chains for t2k.w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.soe.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
3lmmA	583	1.08e-03			
1hh1A	143	7.78e-01	1gefA	c.52.1.18	61036
1u2wA	122	2.68e+00		a.4.5.5	119487
3f72A	122	3.24e+00			
1f07A	321	3.56e+00	1ezwA	c.1.16.3	59560
1r2jA	366	3.99e+00		a.29.3.1	96869
				e.6.1.1	96870
1vlmA	219	4.06e+00		c.66.1.41	108836
2d8mA	129	4.84e+00			
2eo0A	147	6.48e+00			
2bnmA	198	7.68e+00		a.35.1.3	128835
				b.82.1.10	128836
1wcuA	153	7.82e+00			
1smrA	335	8.31e+00	1smrA	b.50.1.2	26878
2ab4A	309	8.95e+00		b.122.1.1	126505
				d.265.1.2	126506
3cjiC	284	9.05e+00			
1pg4A	652	9.45e+00		e.23.1.1	88067
1ze1A	309	9.73e+00		b.122.1.1	124962
				d.265.1.2	124963
1ze2A	309	9.73e+00		b.122.1.1	124970
				d.265.1.2	124971
1r3eA	309	9.74e+00		b.122.1.1	96907
				d.265.1.2	96908
3f9uA	172	9.97e+00			
2f1nA	262	9.98e+00		d.151.1.1	132782
1z69A	327	1.04e+01			
2dzrA	99	1.24e+01			
2owmA	443	1.28e+01			
1mkyA	439	1.28e+01		c.37.1.8	79250
				c.37.1.8	79251
				d.52.5.1	79252
2g0tA	350	1.30e+01		c.37.1.10	134499
2hw4A	144	1.53e+01		d.322.1.1	136821
2dq4A	343	1.53e+01			
3ixtA	225	1.60e+01			
2pwjA	171	1.61e+01			
3e15A	312	1.63e+01			
2ec1A	125	1.71e+01			
2glvA	171	1.73e+01			
2eisA	133	1.80e+01			
1scjA	275	1.80e+01	1gci	c.41.1.1	32486
3dzbA	317	1.84e+01			
3dp1A	159	1.93e+01			
1jpdX	324	1.93e+01		c.1.11.2	67014
				d.54.1.1	67015
2gllA	171	1.98e+01			
1qciA	262	2.04e+01	1qi7A	d.165.1.1	42201
3hr4A	219	2.05e+01			
2p20A	652	2.19e+01			
2p2bA	652	2.20e+01			
2p2jA	652	2.21e+01			
2p2fA	652	2.21e+01			
2p2qA	652	2.22e+01			
1kc2A	103	2.23e+01		d.93.1.1	72291
3bh6A	164	2.65e+01			
3ircA	108	2.69e+01			
3h5kA	261	2.72e+01			
2zo4A	317	2.74e+01			
3a9iA	376	2.75e+01			
2ztjA	382	2.75e+01			
1lybB	241	2.87e+01	1smrA		
1kshA	186	3.04e+01		c.37.1.8	72914
3gm8A	801	3.08e+01			
1p5jA	372	3.11e+01		c.79.1.1	104067
3doeA	192	3.24e+01			
3ejcA	169	3.41e+01			
3hg0A	169	3.41e+01			
1meeA	275	3.42e+01	1gci	c.41.1.1	32540
1sbtA	275	3.46e+01		c.41.1.1	32538
2hwzH	227	3.48e+01			
3kw3A	376	3.53e+01			
3bh7A	164	3.55e+01		c.37.1.8	155255
3kstA	306	3.59e+01			
2a8eA	220	3.64e+01		d.296.1.1	126397
1fzqA	181	3.83e+01	1hurA	c.37.1.8	32060
2q8wA	261	3.83e+01			
1aecA	218	3.84e+01		d.3.1.1	37003
2f0cA	191	3.90e+01		b.21.1.3	132665
				b.108.1.4	132666
1j1qA	261	3.99e+01		d.165.1.1	90768