# List of top-scoring protein chains for t2k.100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 3.07e-05 3l2nA 395 7.13e-01 1wcuA 153 1.95e+00 1f6bA 198 3.02e+00 c.37.1.8 64986 2qkmB 266 3.76e+00 1xtmA 175 3.79e+00 1xtlA 175 4.28e+00 1yzgA 179 4.75e+00 c.37.1.8 124276 3h5kA 261 4.86e+00 1oygA 447 5.01e+00 b.67.2.2 93726 1s4iA 175 5.45e+00 1iz0A 302 5.82e+00 b.35.1.2 83821 c.2.1.1 83822 1j1qA 261 6.15e+00 d.165.1.1 90768 2qtfA 364 6.62e+00 1mkyA 439 6.65e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1c4kA 730 7.07e+00 1ordA c.23.1.4 31273 c.67.1.5 34502 d.125.1.1 41123 3e7eA 365 7.40e+00 3kg7A 293 7.46e+00 2oxgA 108 8.18e+00 1hh1A 143 8.45e+00 1gefA c.52.1.18 61036 2w02A 620 8.70e+00 1ln1A 214 9.32e+00 d.129.3.2 74038 2i8dA 123 9.52e+00 d.198.4.1 147561 3ckwA 304 1.02e+01 1hw7A 255 1.02e+01 1i7fA d.193.1.1 61297 1kwmA 402 1.02e+01 c.56.5.1 73079 d.58.3.1 73080 1qciA 262 1.09e+01 1qi7A d.165.1.1 42201 1kshA 186 1.10e+01 c.37.1.8 72914 2zjrG 174 1.14e+01 c.21.1.1 154560 2a6tA 271 1.14e+01 a.242.1.1 126309 d.113.1.7 126310 1xe0A 114 1.18e+01 b.121.3.1 115197 3efyA 195 1.24e+01 2nsqA 155 1.31e+01 2dyiA 162 1.43e+01 1wi1A 126 1.47e+01 b.55.1.1 114658 3gokA 334 1.48e+01 2cirA 297 1.71e+01 2oc6A 124 1.76e+01 d.198.4.1 148721 3cryA 188 1.83e+01 3hmiA 292 1.90e+01 1ds1A 324 1.92e+01 1drtA b.82.2.2 28127 1om1A 332 1.98e+01 d.144.1.7 93347 2f57A 317 2.04e+01 1bwvS 138 2.26e+01 1rboC d.73.1.1 39662 1q0pA 223 2.28e+01 c.62.1.1 95507 3l48A 94 2.42e+01 1apmE 350 2.48e+01 1cdkA d.144.1.7 41628 1o3yA 166 2.51e+01 c.37.1.8 86618 2zo4A 317 2.53e+01 1kobA 387 2.56e+01 1tkiA d.144.1.7 41640 2bgoA 140 2.57e+01 1zwyA 185 2.60e+01 c.51.4.3 125753 2yyyA 343 2.61e+01 1m2rA 327 2.62e+01 d.144.1.7 84760 1m2oB 190 2.62e+01 c.37.1.8 78485 2wgoA 98 2.67e+01 1rdqE 350 2.72e+01 d.144.1.7 97314 2hwzH 227 2.81e+01 1wd3A 482 2.91e+01 b.29.1.21 109233 b.42.8.1 109234 3fspA 369 3.00e+01 1x9nA 688 3.10e+01 a.235.1.1 115002 b.40.4.6 115003 d.142.2.1 115004 3glaA 100 3.12e+01 3a7iA 303 3.17e+01 2ww2A 737 3.20e+01 1fvuB 125 3.26e+01 1ixxB d.169.1.1 42346 3c0iA 351 3.29e+01 2h6dA 276 3.34e+01 2f1nA 262 3.36e+01 d.151.1.1 132782 2go8A 122 3.39e+01 d.58.4.5 147144 3fpqA 290 3.40e+01 1cfyA 143 3.43e+01 1cof d.109.1.2 40858 1ji6A 589 3.53e+01 b.18.1.3 63066 b.77.2.1 63067 f.1.3.1 63068 2q3xA 171 3.58e+01 2wcwA 139 3.63e+01 2pvrA 334 3.65e+01 d.144.1.7 149893 3bqcA 335 3.65e+01 d.144.1.7 155497 2ov7A 137 3.74e+01 1hfuA 503 3.74e+01 b.6.1.3 65827 b.6.1.3 65828 b.6.1.3 65829 3hrzD 741 3.77e+01 2j7tA 302 3.83e+01 3ec6A 139 3.85e+01 2a5dA 175 3.86e+01 c.37.1.8 126172 2qm4A 235 3.98e+01 2bo9A 308 3.99e+01 c.56.5.1 128897