# List of top-scoring protein chains for t2k.100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 2.42e-05 1yzgA 179 3.44e-01 c.37.1.8 124276 1x9nA 688 1.18e+00 a.235.1.1 115002 b.40.4.6 115003 d.142.2.1 115004 3l2nA 395 1.32e+00 1o3yA 166 1.40e+00 c.37.1.8 86618 1m2oB 190 1.66e+00 c.37.1.8 78485 1ln1A 214 1.67e+00 d.129.3.2 74038 2qtfA 364 1.89e+00 2w83A 165 1.99e+00 2dyiA 162 2.34e+00 2gu3A 136 2.49e+00 d.17.1.6 147178 d.17.1.6 147179 2a5dA 175 2.63e+00 c.37.1.8 126172 1kobA 387 3.28e+00 1tkiA d.144.1.7 41640 1oygA 447 3.44e+00 b.67.2.2 93726 3ckwA 304 3.98e+00 1hh1A 143 3.98e+00 1gefA c.52.1.18 61036 2w02A 620 4.10e+00 2a6tA 271 4.44e+00 a.242.1.1 126309 d.113.1.7 126310 3dawB 164 4.59e+00 1hw7A 255 4.61e+00 1i7fA d.193.1.1 61297 1uptA 171 4.72e+00 c.37.1.8 99767 2cxcA 144 4.77e+00 1wcuA 153 5.11e+00 1kshA 186 5.13e+00 c.37.1.8 72914 2qkmB 266 5.18e+00 3glaA 100 5.64e+00 3kg7A 293 5.77e+00 3fqgA 360 6.26e+00 1m2rA 327 6.41e+00 d.144.1.7 84760 3c0iA 351 6.59e+00 1e8oB 106 6.61e+00 1914 d.49.1.1 38775 3hmiA 292 7.29e+00 2gcoA 201 7.90e+00 1om1A 332 8.15e+00 d.144.1.7 93347 2f57A 317 8.21e+00 1kwmA 402 8.39e+00 c.56.5.1 73079 d.58.3.1 73080 3fpqA 290 8.50e+00 2ov7A 137 8.87e+00 2oxgA 108 8.88e+00 2retA 103 9.17e+00 d.24.1.7 151983 3efyA 195 9.34e+00 1o8uA 257 9.36e+00 c.14.1.3 81194 1szoA 257 9.38e+00 c.14.1.3 106164 1iz0A 302 9.54e+00 b.35.1.2 83821 c.2.1.1 83822 1cojA 212 9.81e+00 1avmA a.2.11.1 15737 d.44.1.1 38734 2bcgY 206 9.82e+00 c.37.1.8 128285 1ukvY 206 1.00e+01 c.37.1.8 107918 1an7A 136 1.01e+01 1seiA d.140.1.1 41465 1r8sA 164 1.02e+01 c.37.1.8 97247 1vluA 468 1.02e+01 c.82.1.1 108864 1hl9A 449 1.04e+01 b.71.1.3 90650 c.1.8.11 90651 1mkyA 439 1.08e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 2p5dA 147 1.10e+01 1xtmA 175 1.13e+01 3eesA 153 1.20e+01 2gxfA 142 1.20e+01 d.17.4.22 147191 1fngA 192 1.27e+01 1iakA b.1.1.2 59904 d.19.1.1 59905 3lxrA 185 1.31e+01 2dj5A 133 1.33e+01 c.92.1.3 131536 1ib8A 164 1.34e+01 b.38.2.1 71168 d.52.4.1 71169 1wakA 397 1.35e+01 2j7tA 302 1.39e+01 2f1nA 262 1.39e+01 d.151.1.1 132782 2eo0A 147 1.41e+01 2h17A 181 1.42e+01 1vlmA 219 1.42e+01 c.66.1.41 108836 2pr1A 163 1.42e+01 2vjxA 846 1.43e+01 b.1.4.1 153203 b.1.4.1 153204 b.1.4.1 153205 b.18.1.5 153206 c.1.8.3 153207 1cfyA 143 1.44e+01 1cof d.109.1.2 40858 2je8A 848 1.46e+01 b.1.4.1 147998 b.1.4.1 147999 b.1.4.1 148000 b.18.1.5 148001 c.1.8.3 148002 1ieaA 192 1.47e+01 1iakA b.1.1.2 21631 d.19.1.1 38205 1zc1A 208 1.49e+01 2p02A 396 1.53e+01 d.130.1.1 149132 d.130.1.1 149133 d.130.1.1 149134 3aazA 229 1.56e+01 2zo4A 317 1.56e+01 1z57A 339 1.59e+01 1o20A 427 1.59e+01 c.82.1.1 86556 1f6bA 198 1.60e+01 c.37.1.8 64986 2kptA 148 1.62e+01 3er7A 131 1.62e+01 d.17.4.24 158191 2h57A 190 1.62e+01 2jbwA 386 1.66e+01 c.69.1.41 147962 2welA 327 1.66e+01 1xtlA 175 1.66e+01 2qm4A 235 1.69e+01 3eqeA 171 1.74e+01 2vr4A 846 1.75e+01 b.1.4.1 153495 b.1.4.1 153496 b.1.4.1 153497 b.18.1.5 153498 c.1.8.3 153499 2zs6A 205 1.87e+01 3c5jA 181 1.88e+01 1s4iA 175 1.88e+01 3lahA 188 1.91e+01 1wh0A 134 1.93e+01 b.15.1.3 114628 2wcwA 139 1.93e+01 1vfgA 390 1.95e+01 a.173.1.1 108570 d.218.1.4 108571 1u55A 188 2.01e+01 d.278.1.1 107677 1a6aA 176 2.02e+01 1iakA b.1.1.2 21615 d.19.1.1 38189 1sjyA 159 2.09e+01 d.113.1.1 98900 3kk8A 284 2.10e+01 2k8qA 134 2.13e+01 3fdjA 278 2.13e+01 2hziA 277 2.16e+01 3e29A 144 2.16e+01 3gwrA 144 2.18e+01 1bn7A 294 2.18e+01 1bn6A c.69.1.8 34677 1zk7A 467 2.22e+01 2wjiA 165 2.24e+01 3fhrA 336 2.24e+01 3fbwA 299 2.27e+01 1n0nA 199 2.27e+01 a.2.11.1 79750 d.44.1.1 79751 1t4hA 290 2.29e+01 d.144.1.7 106420 2vavA 444 2.34e+01 c.69.1.40 152844 2vatA 444 2.37e+01 c.69.1.40 152831 1t23A 93 2.37e+01 d.247.1.1 112216 2zxdA 455 2.38e+01 2vgpA 284 2.41e+01 3g9xA 299 2.42e+01 3bqcA 335 2.43e+01 d.144.1.7 155497 2ofcA 142 2.43e+01 1kmqA 184 2.46e+01 c.37.1.8 84412 1wgpA 137 2.49e+01 b.82.3.2 114619 1r4aA 165 2.57e+01 c.37.1.8 96986 1pl4A 198 2.59e+01 a.2.11.1 94854 d.44.1.1 94855 1rypH 205 2.59e+01 d.153.1.4 41876 1zj6A 187 2.59e+01 c.37.1.8 125145 2uxtA 451 2.67e+01 1aqdA 192 2.68e+01 1iakA b.1.1.2 21585 d.19.1.1 38159 3a7iA 303 2.70e+01 3d79A 179 2.72e+01 3dc6A 198 2.72e+01 2isnA 364 2.78e+01 3fwhA 299 2.82e+01 1bvoA 175 2.83e+01 1a3qA b.2.5.3 22457 2qpzA 103 2.86e+01 2c30A 321 2.91e+01 2ae8A 221 2.93e+01 d.14.1.9 126604 d.14.1.9 126605 3gokA 334 2.93e+01 1gtkA 313 2.95e+01 c.94.1.1 76346 d.50.2.1 76347 2qggA 182 2.96e+01 2bdwA 362 3.00e+01 2ffmA 91 3.02e+01 d.267.1.1 133389 2fkbA 180 3.06e+01 d.113.1.2 133650 1qw2A 102 3.10e+01 d.249.1.1 96456 2gq0A 303 3.11e+01 2gumA 628 3.15e+01 e.76.1.1 147184 1mvfD 82 3.23e+01 b.129.1.1 85143 2abyA 146 3.26e+01 3kfaA 288 3.30e+01 1cqwA 295 3.30e+01 1b6g c.69.1.8 34679 1idsA 207 3.30e+01 1avmA a.2.11.1 15722 d.44.1.1 38730 2wczA 139 3.31e+01 3bp5A 117 3.32e+01 b.1.1.1 155462 3fucA 284 3.39e+01 1opjA 293 3.43e+01 d.144.1.7 87230 1npuA 117 3.44e+01 b.1.1.1 92038 2i79A 172 3.46e+01 1s9rA 410 3.47e+01 d.126.1.4 98758 1gycA 499 3.48e+01 b.6.1.3 70748 b.6.1.3 70749 b.6.1.3 70750 1rdqE 350 3.50e+01 d.144.1.7 97314 1ckiA 317 3.52e+01 1csn d.144.1.7 41660 2ce2X 166 3.57e+01 3bp6A 117 3.57e+01 3cgxA 242 3.57e+01 1lxyA 409 3.59e+01 d.126.1.4 91154 1urjA 1136 3.60e+01 e.58.1.1 113410 1k20A 310 3.64e+01 c.107.1.1 68027 2i5qA 415 3.67e+01 1ds1A 324 3.68e+01 1drtA b.82.2.2 28127 2czrA 226 3.81e+01 c.52.4.1 146440 1l0wA 580 3.81e+01 b.40.4.1 73426 d.74.4.1 73427 d.104.1.1 73428 2dykA 161 3.82e+01 1vetB 125 3.82e+01 d.110.7.1 108554 2q9oA 559 3.87e+01 b.6.1.3 150149 b.6.1.3 150150 b.6.1.3 150151 2z84A 218 3.91e+01 2mbrA 340 3.91e+01 d.145.1.2 41749 d.146.1.1 41762 3grnA 153 3.92e+01 3lo5A 166 3.97e+01 1fzqA 181 3.97e+01 1hurA c.37.1.8 32060 3a57A 165 3.99e+01