# List of top-scoring protein chains for t2k.100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3lmmA 583 4.18e-05 3l2nA 395 1.63e-01 1oygA 447 1.06e+00 b.67.2.2 93726 1yzgA 179 1.35e+00 c.37.1.8 124276 1kshA 186 1.36e+00 c.37.1.8 72914 3ckwA 304 1.93e+00 1kobA 387 2.00e+00 1tkiA d.144.1.7 41640 1f6bA 198 2.03e+00 c.37.1.8 64986 2w02A 620 2.27e+00 2qtfA 364 2.41e+00 1xtlA 175 2.56e+00 1s4iA 175 2.71e+00 2a8eA 220 2.71e+00 d.296.1.1 126397 1xtmA 175 3.20e+00 3efyA 195 3.22e+00 3a8jA 364 3.40e+00 3a8kA 364 3.54e+00 2c30A 321 3.59e+00 2dyiA 162 3.90e+00 1iz0A 302 4.19e+00 b.35.1.2 83821 c.2.1.1 83822 1vloA 381 4.34e+00 b.44.2.1 108838 d.250.1.1 108839 1mkyA 439 4.91e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 2f1nA 262 5.26e+00 d.151.1.1 132782 1xe0A 114 5.80e+00 b.121.3.1 115197 1m2oB 190 5.80e+00 c.37.1.8 78485 2f57A 317 5.85e+00 1kwmA 402 5.90e+00 c.56.5.1 73079 d.58.3.1 73080 2j7tA 302 6.25e+00 2h17A 181 6.92e+00 2q66A 525 6.98e+00 a.160.1.1 150057 d.218.1.3 150058 d.58.16.1 150059 2ov7A 137 7.21e+00 1hl9A 449 7.63e+00 b.71.1.3 90650 c.1.8.11 90651 1fa0A 537 7.68e+00 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 3c0iA 351 7.91e+00 3e7eA 365 8.38e+00 2qkmB 266 8.51e+00 2hhpA 530 9.02e+00 a.160.1.1 136503 d.218.1.3 136504 d.58.16.1 136505 2a5dA 175 9.67e+00 c.37.1.8 126172 2zjrG 174 9.92e+00 c.21.1.1 154560 3dawB 164 1.05e+01 1om1A 332 1.09e+01 d.144.1.7 93347 1m2rA 327 1.11e+01 d.144.1.7 84760 3hx9A 124 1.12e+01 3kg7A 293 1.16e+01 1o3yA 166 1.18e+01 c.37.1.8 86618 3hmiA 292 1.19e+01 3cx2A 108 1.20e+01 2w83A 165 1.22e+01 1vkdA 338 1.22e+01 b.67.2.4 108644 2zo4A 317 1.24e+01 1ln1A 214 1.27e+01 d.129.3.2 74038 1cfyA 143 1.32e+01 1cof d.109.1.2 40858 2a6tA 271 1.36e+01 a.242.1.1 126309 d.113.1.7 126310 1hh1A 143 1.40e+01 1gefA c.52.1.18 61036 1wh0A 134 1.40e+01 b.15.1.3 114628 1hw7A 255 1.44e+01 1i7fA d.193.1.1 61297 1ukvY 206 1.46e+01 c.37.1.8 107918 1wcuA 153 1.49e+01 2hwzH 227 1.49e+01 2bcgY 206 1.53e+01 c.37.1.8 128285 1y10A 407 1.56e+01 1x9nA 688 1.56e+01 a.235.1.1 115002 b.40.4.6 115003 d.142.2.1 115004 1zj6A 187 1.57e+01 c.37.1.8 125145 1wsrA 375 1.58e+01 2hziA 277 1.61e+01 3h5kA 261 1.69e+01 2zxdA 455 1.72e+01 2bgoA 140 1.77e+01 3a7iA 303 1.80e+01 3er7A 131 1.81e+01 d.17.4.24 158191 2wcwA 139 1.81e+01 2gcoA 201 1.85e+01 3gokA 334 1.93e+01 1wi1A 126 1.96e+01 b.55.1.1 114658 2j0iA 303 1.97e+01 1vs0A 310 1.97e+01 3fpqA 290 2.00e+01 2kcpA 98 2.07e+01 1kmqA 184 2.09e+01 c.37.1.8 84412 1bwvS 138 2.19e+01 1rboC d.73.1.1 39662 1xodA 118 2.22e+01 b.55.1.4 122202 2welA 327 2.29e+01 1uptA 171 2.29e+01 c.37.1.8 99767 2kkuA 161 2.31e+01 1zc1A 208 2.36e+01 3c0fB 91 2.38e+01 2cxcA 144 2.42e+01 2p02A 396 2.51e+01 d.130.1.1 149132 d.130.1.1 149133 d.130.1.1 149134 1qm4A 396 2.55e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 2oxgA 108 2.55e+01 1bvoA 175 2.55e+01 1a3qA b.2.5.3 22457 3lahA 188 2.59e+01 3ec6A 139 2.60e+01 2nsqA 155 2.66e+01 2c1cA 312 2.67e+01 c.56.5.1 129630 2pr1A 163 2.68e+01 1c9bB 180 2.75e+01 1ytbA d.129.1.1 41216 d.129.1.1 41217 1z57A 339 2.75e+01 3lxrA 185 2.75e+01 1pqsA 77 2.79e+01 d.15.2.2 88277 2vouA 397 2.84e+01 c.3.1.2 153389 d.16.1.2 153390 2omdA 154 2.86e+01 2wczA 139 2.94e+01 3silA 379 2.98e+01 b.68.1.1 27542 2pziA 681 2.98e+01 1an7A 136 2.99e+01 1seiA d.140.1.1 41465 1t0qC 86 3.00e+01 d.15.12.1 106222 2j5zA 221 3.03e+01 3ew1A 135 3.13e+01 1u55A 188 3.16e+01 d.278.1.1 107677 2gxfA 142 3.26e+01 d.17.4.22 147191 1qciA 262 3.27e+01 1qi7A d.165.1.1 42201 2q9oA 559 3.38e+01 b.6.1.3 150149 b.6.1.3 150150 b.6.1.3 150151 1wgpA 137 3.45e+01 b.82.3.2 114619 2qm4A 235 3.47e+01 1j1qA 261 3.50e+01 d.165.1.1 90768 1aqdA 192 3.50e+01 1iakA b.1.1.2 21585 d.19.1.1 38159 1j71A 334 3.58e+01 1eagA b.50.1.2 62669 3cryA 188 3.59e+01 2retA 103 3.61e+01 d.24.1.7 151983 2yxyA 115 3.62e+01 1zwyA 185 3.62e+01 c.51.4.3 125753 2ih8A 559 3.71e+01 b.6.1.3 137407 b.6.1.3 137408 b.6.1.3 137409 2dj5A 133 3.72e+01 c.92.1.3 131536 2p67A 341 3.77e+01 c.37.1.10 149269 2vapA 364 3.81e+01 c.32.1.1 152828 d.79.2.1 152829 1wosA 364 3.84e+01 b.44.2.1 109468 d.250.1.1 109469 3k9nA 166 3.84e+01 3ioxA 497 3.90e+01 1ji6A 589 3.93e+01 b.18.1.3 63066 b.77.2.1 63067 f.1.3.1 63068 2ch0A 133 3.94e+01 2incC 83 3.96e+01 d.15.12.1 137526 3kfaA 288 3.97e+01 3cfzA 292 4.00e+01