PFRMAT TS TARGET T0555 AUTHOR SAM-T08-server METHOD This prediction was created by the SAM-T08 server, which uses target METHOD and template HMMs to search a large template library and to align the METHOD target to the templates. Undertaker is then used to choose the most METHOD protein-like models from among the alignments, and to do further METHOD optimization to attempt to remove breaks and clashes. METHOD REMARK 6 REMARK 6 T0555 model 3 Fri May 21 21:58:54 2010 MODEL 3 PARENT N/A ATOM 2 N LEU 24 -4.219 -18.091 -9.027 1.00 0.00 ATOM 3 CA LEU 24 -2.875 -17.887 -9.543 1.00 0.00 ATOM 4 CB LEU 24 -2.685 -18.649 -10.855 1.00 0.00 ATOM 5 CG LEU 24 -2.698 -20.176 -10.762 1.00 0.00 ATOM 6 CD1 LEU 24 -2.651 -20.802 -12.147 1.00 0.00 ATOM 7 CD2 LEU 24 -1.536 -20.673 -9.917 1.00 0.00 ATOM 8 O LEU 24 -1.475 -15.996 -10.018 1.00 0.00 ATOM 9 C LEU 24 -2.605 -16.395 -9.746 1.00 0.00 ATOM 10 N GLU 25 -3.665 -15.610 -9.606 1.00 0.00 ATOM 11 CA GLU 25 -3.556 -14.170 -9.770 1.00 0.00 ATOM 12 CB GLU 25 -4.892 -13.582 -10.229 1.00 0.00 ATOM 13 CG GLU 25 -5.290 -13.977 -11.642 1.00 0.00 ATOM 14 CD GLU 25 -6.641 -13.415 -12.045 1.00 0.00 ATOM 15 OE1 GLU 25 -7.345 -12.875 -11.166 1.00 0.00 ATOM 16 OE2 GLU 25 -6.993 -13.515 -13.239 1.00 0.00 ATOM 17 O GLU 25 -2.277 -12.633 -8.442 1.00 0.00 ATOM 18 C GLU 25 -3.104 -13.543 -8.450 1.00 0.00 ATOM 19 N LYS 26 -3.668 -14.055 -7.364 1.00 0.00 ATOM 20 CA LYS 26 -3.332 -13.555 -6.042 1.00 0.00 ATOM 21 CB LYS 26 -3.769 -14.553 -4.966 1.00 0.00 ATOM 22 CG LYS 26 -3.503 -14.087 -3.544 1.00 0.00 ATOM 23 CD LYS 26 -4.034 -15.086 -2.528 1.00 0.00 ATOM 24 CE LYS 26 -3.743 -14.634 -1.107 1.00 0.00 ATOM 25 NZ LYS 26 -4.257 -15.602 -0.099 1.00 0.00 ATOM 26 O LYS 26 -1.391 -12.352 -5.305 1.00 0.00 ATOM 27 C LYS 26 -1.828 -13.292 -5.967 1.00 0.00 ATOM 28 N ASN 27 -1.076 -14.138 -6.655 1.00 0.00 ATOM 29 CA ASN 27 0.372 -14.008 -6.674 1.00 0.00 ATOM 30 CB ASN 27 1.035 -15.387 -6.687 1.00 0.00 ATOM 31 CG ASN 27 0.916 -16.101 -5.355 1.00 0.00 ATOM 32 ND2 ASN 27 1.083 -17.418 -5.373 1.00 0.00 ATOM 33 OD1 ASN 27 0.677 -15.473 -4.321 1.00 0.00 ATOM 34 O ASN 27 1.476 -12.165 -7.743 1.00 0.00 ATOM 35 C ASN 27 0.788 -13.173 -7.887 1.00 0.00 ATOM 36 N ALA 28 0.351 -13.624 -9.054 1.00 0.00 ATOM 37 CA ALA 28 0.670 -12.930 -10.291 1.00 0.00 ATOM 38 CB ALA 28 -0.053 -13.578 -11.462 1.00 0.00 ATOM 39 O ALA 28 1.031 -10.575 -10.587 1.00 0.00 ATOM 40 C ALA 28 0.287 -11.455 -10.157 1.00 0.00 ATOM 41 N VAL 29 -0.873 -11.230 -9.557 1.00 0.00 ATOM 42 CA VAL 29 -1.363 -9.876 -9.361 1.00 0.00 ATOM 43 CB VAL 29 -2.761 -9.869 -8.715 1.00 0.00 ATOM 44 CG1 VAL 29 -2.654 -9.632 -7.216 1.00 0.00 ATOM 45 CG2 VAL 29 -3.643 -8.813 -9.364 1.00 0.00 ATOM 46 O VAL 29 0.235 -8.128 -8.967 1.00 0.00 ATOM 47 C VAL 29 -0.365 -9.096 -8.503 1.00 0.00 ATOM 48 N ILE 30 -0.219 -9.548 -7.266 1.00 0.00 ATOM 49 CA ILE 30 0.696 -8.904 -6.338 1.00 0.00 ATOM 50 CB ILE 30 0.935 -9.772 -5.088 1.00 0.00 ATOM 51 CG1 ILE 30 1.299 -8.893 -3.890 1.00 0.00 ATOM 52 CG2 ILE 30 2.000 -10.821 -5.365 1.00 0.00 ATOM 53 CD1 ILE 30 0.307 -7.782 -3.624 1.00 0.00 ATOM 54 O ILE 30 2.541 -7.497 -6.956 1.00 0.00 ATOM 55 C ILE 30 2.014 -8.604 -7.054 1.00 0.00 ATOM 56 N LYS 31 2.511 -9.611 -7.757 1.00 0.00 ATOM 57 CA LYS 31 3.758 -9.469 -8.490 1.00 0.00 ATOM 58 CB LYS 31 4.298 -10.841 -8.898 1.00 0.00 ATOM 59 CG LYS 31 5.626 -10.790 -9.636 1.00 0.00 ATOM 60 CD LYS 31 6.141 -12.187 -9.943 1.00 0.00 ATOM 61 CE LYS 31 7.458 -12.136 -10.701 1.00 0.00 ATOM 62 NZ LYS 31 7.975 -13.498 -11.009 1.00 0.00 ATOM 63 O LYS 31 4.100 -7.491 -9.806 1.00 0.00 ATOM 64 C LYS 31 3.545 -8.585 -9.720 1.00 0.00 ATOM 65 N ALA 32 2.741 -9.094 -10.642 1.00 0.00 ATOM 66 CA ALA 32 2.447 -8.364 -11.864 1.00 0.00 ATOM 67 CB ALA 32 1.536 -9.184 -12.765 1.00 0.00 ATOM 68 O ALA 32 2.275 -5.973 -11.980 1.00 0.00 ATOM 69 C ALA 32 1.807 -7.016 -11.528 1.00 0.00 ATOM 70 N ALA 33 0.746 -7.082 -10.736 1.00 0.00 ATOM 71 CA ALA 33 0.038 -5.879 -10.333 1.00 0.00 ATOM 72 CB ALA 33 -0.914 -6.184 -9.187 1.00 0.00 ATOM 73 O ALA 33 1.024 -3.695 -10.470 1.00 0.00 ATOM 74 C ALA 33 1.051 -4.803 -9.938 1.00 0.00 ATOM 75 N TYR 34 1.919 -5.169 -9.006 1.00 0.00 ATOM 76 CA TYR 34 2.939 -4.248 -8.533 1.00 0.00 ATOM 77 CB TYR 34 4.050 -5.007 -7.805 1.00 0.00 ATOM 78 CG TYR 34 3.641 -5.539 -6.450 1.00 0.00 ATOM 79 CD1 TYR 34 4.187 -6.718 -5.956 1.00 0.00 ATOM 80 CD2 TYR 34 2.713 -4.863 -5.669 1.00 0.00 ATOM 81 CE1 TYR 34 3.820 -7.213 -4.720 1.00 0.00 ATOM 82 CE2 TYR 34 2.333 -5.343 -4.431 1.00 0.00 ATOM 83 CZ TYR 34 2.896 -6.529 -3.959 1.00 0.00 ATOM 84 OH TYR 34 2.529 -7.020 -2.727 1.00 0.00 ATOM 85 O TYR 34 3.413 -2.244 -9.768 1.00 0.00 ATOM 86 C TYR 34 3.482 -3.472 -9.735 1.00 0.00 ATOM 87 N ARG 35 4.008 -4.221 -10.693 1.00 0.00 ATOM 88 CA ARG 35 4.562 -3.619 -11.893 1.00 0.00 ATOM 89 CB ARG 35 5.794 -4.394 -12.362 1.00 0.00 ATOM 90 CG ARG 35 6.509 -3.767 -13.549 1.00 0.00 ATOM 91 CD ARG 35 5.962 -4.295 -14.864 1.00 0.00 ATOM 92 NE ARG 35 6.229 -5.722 -15.037 1.00 0.00 ATOM 93 CZ ARG 35 5.589 -6.504 -15.900 1.00 0.00 ATOM 94 NH1 ARG 35 5.901 -7.790 -15.986 1.00 0.00 ATOM 95 NH2 ARG 35 4.640 -5.997 -16.675 1.00 0.00 ATOM 96 O ARG 35 3.166 -2.518 -13.506 1.00 0.00 ATOM 97 C ARG 35 3.488 -3.583 -12.982 1.00 0.00 ATOM 98 N GLN 36 2.966 -4.760 -13.293 1.00 0.00 ATOM 99 CA GLN 36 1.935 -4.877 -14.311 1.00 0.00 ATOM 100 CB GLN 36 1.371 -6.298 -14.343 1.00 0.00 ATOM 101 CG GLN 36 0.367 -6.542 -15.456 1.00 0.00 ATOM 102 CD GLN 36 0.987 -6.431 -16.835 1.00 0.00 ATOM 103 OE1 GLN 36 2.015 -7.049 -17.115 1.00 0.00 ATOM 104 NE2 GLN 36 0.363 -5.642 -17.701 1.00 0.00 ATOM 105 O GLN 36 0.182 -3.387 -14.995 1.00 0.00 ATOM 106 C GLN 36 0.818 -3.863 -14.057 1.00 0.00 ATOM 107 N ILE 37 0.612 -3.564 -12.782 1.00 0.00 ATOM 108 CA ILE 37 -0.416 -2.616 -12.393 1.00 0.00 ATOM 109 CB ILE 37 -0.681 -2.661 -10.876 1.00 0.00 ATOM 110 CG1 ILE 37 -1.212 -4.038 -10.468 1.00 0.00 ATOM 111 CG2 ILE 37 -1.629 -1.544 -10.468 1.00 0.00 ATOM 112 CD1 ILE 37 -2.520 -4.408 -11.132 1.00 0.00 ATOM 113 O ILE 37 -0.569 -0.673 -13.795 1.00 0.00 ATOM 114 C ILE 37 -0.040 -1.194 -12.813 1.00 0.00 ATOM 115 N PHE 38 0.870 -0.608 -12.050 1.00 0.00 ATOM 116 CA PHE 38 1.324 0.745 -12.332 1.00 0.00 ATOM 117 CB PHE 38 1.170 1.631 -11.094 1.00 0.00 ATOM 118 CG PHE 38 -0.253 1.796 -10.641 1.00 0.00 ATOM 119 CD1 PHE 38 -0.592 1.643 -9.308 1.00 0.00 ATOM 120 CD2 PHE 38 -1.250 2.108 -11.546 1.00 0.00 ATOM 121 CE1 PHE 38 -1.902 1.796 -8.890 1.00 0.00 ATOM 122 CE2 PHE 38 -2.560 2.261 -11.130 1.00 0.00 ATOM 123 CZ PHE 38 -2.887 2.107 -9.808 1.00 0.00 ATOM 124 O PHE 38 3.624 1.430 -12.319 1.00 0.00 ATOM 125 C PHE 38 2.779 0.676 -12.798 1.00 0.00 ATOM 126 N GLU 39 3.027 -0.237 -13.726 1.00 0.00 ATOM 127 CA GLU 39 4.366 -0.415 -14.263 1.00 0.00 ATOM 128 CB GLU 39 5.272 -1.090 -13.232 1.00 0.00 ATOM 129 CG GLU 39 5.559 -0.238 -12.005 1.00 0.00 ATOM 130 CD GLU 39 6.432 -0.951 -10.993 1.00 0.00 ATOM 131 OE1 GLU 39 7.175 -1.872 -11.392 1.00 0.00 ATOM 132 OE2 GLU 39 6.374 -0.589 -9.798 1.00 0.00 ATOM 133 O GLU 39 5.290 -1.215 -16.328 1.00 0.00 ATOM 134 C GLU 39 4.334 -1.235 -15.554 1.00 0.00 ATOM 135 N ARG 40 3.227 -1.935 -15.746 1.00 0.00 ATOM 136 CA ARG 40 3.060 -2.761 -16.930 1.00 0.00 ATOM 137 CB ARG 40 1.581 -2.856 -17.312 1.00 0.00 ATOM 138 CG ARG 40 0.955 -1.528 -17.703 1.00 0.00 ATOM 139 CD ARG 40 -0.557 -1.639 -17.806 1.00 0.00 ATOM 140 NE ARG 40 -0.968 -2.537 -18.883 1.00 0.00 ATOM 141 CZ ARG 40 -2.232 -2.757 -19.232 1.00 0.00 ATOM 142 NH1 ARG 40 -2.510 -3.591 -20.224 1.00 0.00 ATOM 143 NH2 ARG 40 -3.213 -2.143 -18.586 1.00 0.00 ATOM 144 O ARG 40 3.444 -1.256 -18.760 1.00 0.00 ATOM 145 C ARG 40 3.888 -2.176 -18.075 1.00 0.00 ATOM 146 N ASP 41 5.077 -2.734 -18.248 1.00 0.00 ATOM 147 CA ASP 41 5.971 -2.278 -19.299 1.00 0.00 ATOM 148 CB ASP 41 5.989 -0.750 -19.363 1.00 0.00 ATOM 149 CG ASP 41 4.682 -0.173 -19.869 1.00 0.00 ATOM 150 OD1 ASP 41 3.875 -0.938 -20.438 1.00 0.00 ATOM 151 OD2 ASP 41 4.463 1.044 -19.698 1.00 0.00 ATOM 152 O ASP 41 7.894 -3.596 -19.875 1.00 0.00 ATOM 153 C ASP 41 7.384 -2.821 -19.069 1.00 0.00 ATOM 154 N ILE 42 7.975 -2.389 -17.964 1.00 0.00 ATOM 155 CA ILE 42 9.318 -2.821 -17.617 1.00 0.00 ATOM 156 CB ILE 42 9.840 -2.093 -16.365 1.00 0.00 ATOM 157 CG1 ILE 42 8.966 -2.423 -15.153 1.00 0.00 ATOM 158 CG2 ILE 42 9.920 -0.594 -16.615 1.00 0.00 ATOM 159 CD1 ILE 42 9.539 -1.945 -13.837 1.00 0.00 ATOM 160 O ILE 42 8.294 -4.976 -17.355 1.00 0.00 ATOM 161 C ILE 42 9.342 -4.335 -17.404 1.00 0.00 ATOM 165 N TYR 46 10.583 -4.878 -17.276 1.00 0.00 ATOM 166 CA TYR 46 10.757 -6.306 -17.069 1.00 0.00 ATOM 167 CB TYR 46 12.194 -6.723 -17.388 1.00 0.00 ATOM 168 CG TYR 46 12.540 -6.655 -18.859 1.00 0.00 ATOM 169 CD1 TYR 46 13.470 -5.738 -19.330 1.00 0.00 ATOM 170 CD2 TYR 46 11.933 -7.510 -19.771 1.00 0.00 ATOM 171 CE1 TYR 46 13.792 -5.670 -20.671 1.00 0.00 ATOM 172 CE2 TYR 46 12.242 -7.456 -21.117 1.00 0.00 ATOM 173 CZ TYR 46 13.180 -6.525 -21.563 1.00 0.00 ATOM 174 OH TYR 46 13.498 -6.459 -22.899 1.00 0.00 ATOM 175 O TYR 46 9.729 -7.705 -15.410 1.00 0.00 ATOM 176 C TYR 46 10.401 -6.699 -15.634 1.00 0.00 ATOM 177 N SER 47 10.868 -5.884 -14.698 1.00 0.00 ATOM 178 CA SER 47 10.608 -6.135 -13.292 1.00 0.00 ATOM 179 CB SER 47 10.631 -7.637 -13.000 1.00 0.00 ATOM 180 OG SER 47 10.870 -7.885 -11.626 1.00 0.00 ATOM 181 O SER 47 12.373 -6.026 -11.668 1.00 0.00 ATOM 182 C SER 47 11.638 -5.401 -12.431 1.00 0.00 ATOM 183 N GLN 48 11.660 -4.084 -12.581 1.00 0.00 ATOM 184 CA GLN 48 12.587 -3.259 -11.828 1.00 0.00 ATOM 185 CB GLN 48 12.549 -1.814 -12.329 1.00 0.00 ATOM 186 CG GLN 48 13.124 -1.625 -13.723 1.00 0.00 ATOM 187 CD GLN 48 12.996 -0.198 -14.217 1.00 0.00 ATOM 188 OE1 GLN 48 12.109 0.541 -13.789 1.00 0.00 ATOM 189 NE2 GLN 48 13.886 0.196 -15.122 1.00 0.00 ATOM 190 O GLN 48 13.127 -3.392 -9.492 1.00 0.00 ATOM 191 C GLN 48 12.238 -3.334 -10.340 1.00 0.00 ATOM 192 N SER 49 10.940 -3.332 -10.069 1.00 0.00 ATOM 193 CA SER 49 10.461 -3.399 -8.698 1.00 0.00 ATOM 194 CB SER 49 10.201 -1.993 -8.152 1.00 0.00 ATOM 195 OG SER 49 9.209 -1.327 -8.913 1.00 0.00 ATOM 196 O SER 49 8.491 -4.268 -7.638 1.00 0.00 ATOM 197 C SER 49 9.194 -4.252 -8.648 1.00 0.00 ATOM 198 N ILE 50 8.939 -4.943 -9.749 1.00 0.00 ATOM 199 CA ILE 50 7.766 -5.798 -9.842 1.00 0.00 ATOM 200 CB ILE 50 7.799 -6.665 -11.115 1.00 0.00 ATOM 201 CG1 ILE 50 6.439 -7.325 -11.345 1.00 0.00 ATOM 202 CG2 ILE 50 8.919 -7.691 -11.031 1.00 0.00 ATOM 203 CD1 ILE 50 6.286 -7.946 -12.716 1.00 0.00 ATOM 204 O ILE 50 7.027 -6.301 -7.614 1.00 0.00 ATOM 205 C ILE 50 7.656 -6.683 -8.599 1.00 0.00 ATOM 206 N SER 51 8.278 -7.850 -8.686 1.00 0.00 ATOM 207 CA SER 51 8.256 -8.793 -7.580 1.00 0.00 ATOM 208 CB SER 51 9.107 -10.022 -7.907 1.00 0.00 ATOM 209 OG SER 51 10.477 -9.678 -8.020 1.00 0.00 ATOM 210 O SER 51 8.302 -8.402 -5.212 1.00 0.00 ATOM 211 C SER 51 8.758 -8.098 -6.312 1.00 0.00 ATOM 212 N TYR 52 9.691 -7.179 -6.511 1.00 0.00 ATOM 213 CA TYR 52 10.260 -6.438 -5.398 1.00 0.00 ATOM 214 CB TYR 52 11.147 -5.300 -5.908 1.00 0.00 ATOM 215 CG TYR 52 11.767 -4.466 -4.810 1.00 0.00 ATOM 216 CD1 TYR 52 12.880 -4.921 -4.115 1.00 0.00 ATOM 217 CD2 TYR 52 11.237 -3.228 -4.471 1.00 0.00 ATOM 218 CE1 TYR 52 13.454 -4.166 -3.109 1.00 0.00 ATOM 219 CE2 TYR 52 11.798 -2.459 -3.469 1.00 0.00 ATOM 220 CZ TYR 52 12.915 -2.939 -2.788 1.00 0.00 ATOM 221 OH TYR 52 13.484 -2.186 -1.787 1.00 0.00 ATOM 222 O TYR 52 8.844 -6.478 -3.460 1.00 0.00 ATOM 223 C TYR 52 9.162 -5.884 -4.489 1.00 0.00 ATOM 224 N LEU 53 8.612 -4.752 -4.903 1.00 0.00 ATOM 225 CA LEU 53 7.555 -4.111 -4.139 1.00 0.00 ATOM 226 CB LEU 53 6.979 -2.924 -4.913 1.00 0.00 ATOM 227 CG LEU 53 7.896 -1.710 -5.074 1.00 0.00 ATOM 228 CD1 LEU 53 7.277 -0.689 -6.016 1.00 0.00 ATOM 229 CD2 LEU 53 8.190 -1.075 -3.724 1.00 0.00 ATOM 230 O LEU 53 6.005 -5.226 -2.682 1.00 0.00 ATOM 231 C LEU 53 6.467 -5.138 -3.819 1.00 0.00 ATOM 232 N GLU 54 6.090 -5.891 -4.841 1.00 0.00 ATOM 233 CA GLU 54 5.066 -6.909 -4.683 1.00 0.00 ATOM 234 CB GLU 54 5.115 -7.904 -5.844 1.00 0.00 ATOM 235 CG GLU 54 3.966 -8.899 -5.858 1.00 0.00 ATOM 236 CD GLU 54 4.213 -10.086 -4.948 1.00 0.00 ATOM 237 OE1 GLU 54 5.393 -10.399 -4.687 1.00 0.00 ATOM 238 OE2 GLU 54 3.226 -10.703 -4.496 1.00 0.00 ATOM 239 O GLU 54 4.253 -7.830 -2.620 1.00 0.00 ATOM 240 C GLU 54 5.225 -7.646 -3.351 1.00 0.00 ATOM 241 N SER 55 6.457 -8.047 -3.079 1.00 0.00 ATOM 242 CA SER 55 6.757 -8.759 -1.847 1.00 0.00 ATOM 243 CB SER 55 7.802 -9.848 -2.099 1.00 0.00 ATOM 244 OG SER 55 9.047 -9.283 -2.478 1.00 0.00 ATOM 245 O SER 55 6.629 -7.623 0.263 1.00 0.00 ATOM 246 C SER 55 7.244 -7.763 -0.793 1.00 0.00 ATOM 247 N GLN 56 8.343 -7.098 -1.115 1.00 0.00 ATOM 248 CA GLN 56 8.919 -6.121 -0.208 1.00 0.00 ATOM 249 CB GLN 56 10.153 -5.469 -0.835 1.00 0.00 ATOM 250 CG GLN 56 10.886 -4.508 0.087 1.00 0.00 ATOM 251 CD GLN 56 11.486 -5.204 1.294 1.00 0.00 ATOM 252 OE1 GLN 56 12.242 -6.166 1.155 1.00 0.00 ATOM 253 NE2 GLN 56 11.154 -4.717 2.483 1.00 0.00 ATOM 254 O GLN 56 7.766 -4.660 1.309 1.00 0.00 ATOM 255 C GLN 56 7.875 -5.063 0.152 1.00 0.00 ATOM 256 N VAL 57 7.133 -4.640 -0.861 1.00 0.00 ATOM 257 CA VAL 57 6.100 -3.636 -0.666 1.00 0.00 ATOM 258 CB VAL 57 5.477 -3.199 -2.005 1.00 0.00 ATOM 259 CG1 VAL 57 4.724 -4.355 -2.644 1.00 0.00 ATOM 260 CG2 VAL 57 4.555 -2.008 -1.800 1.00 0.00 ATOM 261 O VAL 57 4.821 -3.655 1.365 1.00 0.00 ATOM 262 C VAL 57 5.030 -4.188 0.276 1.00 0.00 TER END