Best Alignments for T0555

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template Template E-value A2M alignment SCOP Domain(s)
1a6sA 1.3031e+01 1a6sA/T0555-1a6sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.61.1.4
2od5A 1.8466e+01 2od5A/T0555-2od5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.4.5.70
1uhnA 2.4432e+01 1uhnA/T0555-1uhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5
2r2iA 2.8415e+01 2r2iA/T0555-2r2iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1alvA 3.0474e+01 1alvA/T0555-1alvA-t06-local-alpha-1.2+0.9-adpstyle5.a2m a.39.1.8
1u2wA 3.0569e+01 1u2wA/T0555-1u2wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.4.5.5
1owlA 3.2606e+01 1owlA/T0555-1owlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.99.1.1
c.28.1.1
2qorA 3.3526e+01 2qorA/T0555-2qorA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zfdA 3.4063e+01 2zfdA/T0555-2zfdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5
2fozA 3.5262e+01 2fozA/T0555-2fozA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1k94A 3.5960e+01 1k94A/T0555-1k94A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.8
1wdcB 3.6633e+01 1wdcB/T0555-1wdcB-t06-local-alpha-1.2+0.9-adpstyle5.a2m a.39.1.5
3lsgA 3.8218e+01 3lsgA/T0555-3lsgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1s1eA 3.9726e+01 1s1eA/T0555-1s1eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5
1xo5A 4.6555e+01 1xo5A/T0555-1xo5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5
1exrA 4.8407e+01 1exrA/T0555-1exrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5
2ct9A 4.8863e+01 2ct9A/T0555-2ct9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uhkA 5.2743e+01 1uhkA/T0555-1uhkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wsuA 5.3671e+01 1wsuA/T0555-1wsuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.4.5.35
a.4.5.35
1ggzA 5.3742e+01 1ggzA/T0555-1ggzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m a.39.1.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001