Best Alignments for T0555

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1m41A	2.9347e+00	1m41A/T0555-1m41A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.16.4
1nqkA	4.9415e+00	1nqkA/T0555-1nqkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.16.4
1rxqA	9.8907e+00	1rxqA/T0555-1rxqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.213.1.1
2r2iA	1.2355e+01	2r2iA/T0555-2r2iA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uhkA	1.4696e+01	1uhkA/T0555-1uhkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1alvA	1.5855e+01	1alvA/T0555-1alvA-t2k-local-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.8
2ct9A	1.8180e+01	2ct9A/T0555-2ct9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1a6sA	1.9490e+01	1a6sA/T0555-1a6sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.61.1.4
2zfdA	1.9700e+01	2zfdA/T0555-2zfdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1sl8A	2.0413e+01	1sl8A/T0555-1sl8A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1uhnA	2.1279e+01	1uhnA/T0555-1uhnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1ej3A	2.2434e+01	1ej3A/T0555-1ej3A-t2k-global-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.5
1y1xA	2.2586e+01	1y1xA/T0555-1y1xA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.8
1scmB	2.3186e+01	1scmB/T0555-1scmB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1rec	2.3826e+01	1rec/T0555-1rec-t2k-global-alpha-1.2+0.9-adpstyle5.a2m
1exrA	2.4963e+01	1exrA/T0555-1exrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1wdcB	2.5541e+01	1wdcB/T0555-1wdcB-t2k-global-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.5
1cfpA	2.6502e+01	1cfpA/T0555-1cfpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jf2A	2.7599e+01	1jf2A/T0555-1jf2A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2oo6A	2.8190e+01	2oo6A/T0555-2oo6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001