# List of top-scoring protein chains for T0555.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r22A	122	9.273	a.4.5.5	104777
1r1tA	122	18.23	a.4.5.5	104769
3ledA	392	35.56		
3hrsA	214	49.66		
2od5A	116	65.95	a.4.5.70	148736
1yifA	533	77.05	b.29.1.23,b.67.2.1	123283,123284
1pthA	576	81.39	a.93.1.2,g.3.11.1	18705,44248
1ebvA	551	82.44	a.93.1.2,g.3.11.1	18709,44252
1idrA	136	84.24	a.1.1.1	62301