# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rxqA	178	0.8741	a.213.1.1	105118
1a6sA	87	3.130	a.61.1.4	18134
2qgyA	391	5.499		
2oo6A	409	7.794		
3go2A	409	7.982		
1alvA	173	9.577	a.39.1.8	17370
3gy1A	408	10.49		
2mnr	357	13.76		
1y1xA	191	14.43	a.39.1.8	116374
1wsuA	124	14.51	a.4.5.35,a.4.5.35	121245,121246
1rvkA	382	15.02	c.1.11.2,d.54.1.1	97928,97929
2r2iA	198	15.25		
1z6gA	218	16.48		
3lsgA	103	18.35		
2jl1A	287	18.73		
2od5A	116	19.16	a.4.5.70	148736
1vqzA	341	20.20	d.224.1.3,d.104.1.3	120426,120427
3mkcA	394	21.29		
3dfhA	394	22.36		
2hydA	578	24.13	c.37.1.12,f.37.1.1	136875,136876
1z1dA	103	28.65	a.4.5.16	124351
1scmB	145	30.13	a.39.1.5	17304
2zfdA	226	33.00	a.39.1.5	154406
3fxgA	455	33.51		
1s4qA	228	33.62	c.37.1.1	98507
2g7zA	282	34.11		
3i4kA	383	36.24		
2qjjA	402	36.63		
1dw0A	112	38.85	a.3.1.1	15911
1qmgA	524	40.11	a.100.1.2,c.2.1.6	18785,30182
3cuoA	99	41.98		
1nvmA	345	42.19	a.5.7.1,c.1.10.5	86249,86250
1nqkA	381	43.75	c.1.16.4	92050
3edtB	283	43.84		
2zkzA	99	44.04		
2gb7A	305	44.57		
1wdcB	156	47.86	a.39.1.5	17302
3gw2A	108	48.95		
3jthA	98	51.71		
1k94A	165	51.87	a.39.1.8	68333
1lvaA	258	55.55	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2zfoD	155	55.93		
1aj5A	173	56.03	a.39.1.8	17367
1mixA	206	57.12	a.11.2.1,b.55.1.5	79166,79167
2pgwA	384	62.46		
2zcuA	286	63.92		
1m41A	380	66.10	c.1.16.4	78595
3fv9A	386	66.31		
3e48A	289	70.58		
1ub9A	100	70.85	a.4.5.28	99159
3dgbA	382	70.95		
2fkiA	126	71.30	d.198.3.1	133657
2wk6A	482	72.12		
2ki5A	366	75.57	c.37.1.1	31862
2jc9A	555	76.22		
1qhiA	366	76.68	c.37.1.1	31860
1np8A	159	77.81	a.39.1.8	92022
1qnf	484	78.73		
1jbaA	204	80.84	a.39.1.5	17330
1ec7A	446	81.04	c.1.11.2,d.54.1.1	29218,38862
3cztX	92	82.81		
3boxA	415	82.90		
2zhjA	322	85.49		
3kb9A	382	86.19