# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a6sA 87 0.8890 a.61.1.4 18134 1rxqA 178 0.9853 a.213.1.1 105118 2r2iA 198 1.375 1alvA 173 1.946 a.39.1.8 17370 1m41A 380 2.444 c.1.16.4 78595 2zfdA 226 2.893 a.39.1.5 154406 1wsuA 124 3.069 a.4.5.35,a.4.5.35 121245,121246 3go2A 409 4.218 2oo6A 409 4.421 1y1xA 191 4.879 a.39.1.8 116374 1scmB 145 5.181 a.39.1.5 17304 2zkzA 99 5.211 3gy1A 408 6.278 1nqkA 381 6.727 c.1.16.4 92050 2qgyA 391 6.881 2mnr 357 7.603 3lsgA 103 7.673 2gb7A 305 8.184 1ub9A 100 9.866 a.4.5.28 99159 1aj5A 173 10.45 a.39.1.8 17367 3dfhA 394 11.16 1wdcB 156 11.37 a.39.1.5 17302 1rvkA 382 12.48 c.1.11.2,d.54.1.1 97928,97929 1sfxA 109 12.83 a.4.5.50 105505 3cztX 92 13.05 1s4qA 228 13.25 c.37.1.1 98507 2od5A 116 13.53 a.4.5.70 148736 1a4pA 96 14.62 a.39.1.2 17176 1xo5A 183 15.44 a.39.1.5 115680 3c1dA 159 15.64 3i4kA 383 15.67 1g8iA 190 16.79 a.39.1.5 60363 2zcuA 286 17.07 1jbaA 204 17.31 a.39.1.5 17330 1lvaA 258 18.01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2jl1A 287 18.50 1dw0A 112 19.05 a.3.1.1 15911 2qjjA 402 19.48 1cznA 169 19.69 c.23.5.1 31181 2ki5A 366 20.60 c.37.1.1 31862 1ggzA 148 21.62 a.39.1.5 70176 3mkcA 394 22.65 1cll 148 23.44 3e48A 289 23.97 1qhiA 366 25.72 c.37.1.1 31860 2zhjA 322 26.11 3dgbA 382 26.43 1p6xA 334 28.30 c.37.1.1 94195 1k94A 165 28.33 a.39.1.8 68333 1y0vH 146 29.09 a.39.1.5 145893 1qlsA 99 29.36 a.39.1.2 17185 2ip2A 334 30.03 1ppjB 439 30.40 d.185.1.1,d.185.1.1 104254,104255 1z6gA 218 30.99 3cs1A 219 31.13 1kk8B 139 31.84 a.39.1.5 77430 1mixA 206 32.17 a.11.2.1,b.55.1.5 79166,79167 1jf2A 195 32.30 a.39.1.5 62930 3cuoA 99 33.17 3c1vA 113 33.97 a.39.1.2 155867 1hkqA 132 34.53 a.4.5.10 83555 1rwyA 109 34.62 a.39.1.4 98002 2q91A 101 35.64 a.39.1.2 150135 2g7zA 282 35.88 3cr5X 92 37.63 a.39.1.2 156942 3fv9A 386 38.99 1exrA 148 39.11 a.39.1.5 17299 1vqzA 341 40.29 d.224.1.3,d.104.1.3 120426,120427 2zndA 172 40.46 1dwkA 156 40.73 a.35.1.4,d.72.1.1 17075,39606 2pjpA 121 41.66 1np8A 159 41.85 a.39.1.8 92022 1ncx 162 41.97 1xfxO 149 43.88 a.39.1.5 121955 1auiB 169 44.91 a.39.1.5 17325 2ct9A 208 45.65 3fcpA 381 46.31 2obhA 143 46.44 a.39.1.5 148716 2qdeA 397 46.47 1w3wA 327 46.58 2woeA 299 46.97 1b8lA 108 47.26 a.39.1.4 17199 1qmgA 524 47.88 a.100.1.2,c.2.1.6 18785,30182 1nu5A 370 48.23 c.1.11.2,d.54.1.1 92183,92184 1okrA 123 49.99 a.4.5.39 93269 1e8aA 91 50.01 a.39.1.2 17188 1f4qA 165 50.76 a.39.1.8 17360 2wocA 299 51.32 3h12A 397 51.33 1bqg 451 51.52 1ec7A 446 51.65 c.1.11.2,d.54.1.1 29218,38862 2ce7A 476 52.55 a.269.1.1,c.37.1.20 130312,130313 3jthA 98 52.64 5palA 109 54.10 a.39.1.4 17215 1a75A 108 54.39 a.39.1.4 17216 1kfuS 184 55.20 a.39.1.8 68574 3gw2A 108 55.25 1pvaA 110 55.82 a.39.1.4 17207 2podA 410 55.92 3c8nA 356 56.29 1smtA 122 57.51 a.4.5.5 16109 3chjA 337 57.60 1ujsA 88 58.19 a.14.1.1 99467 1qzpA 68 58.42 a.14.1.1 96654 2z00A 426 59.13 3fxgA 455 59.53 1b4cA 92 61.61 a.39.1.2 17169 1b8rA 108 62.44 a.39.1.4 17201 2hydA 578 63.97 c.37.1.12,f.37.1.1 136875,136876 1z1dA 103 64.94 a.4.5.16 124351 1dguA 183 65.28 a.39.1.5 17333 2pvbA 107 65.69 a.39.1.4 17205 3boxA 415 65.99 1a2xA 159 66.32 a.39.1.5 17251 2frhA 127 66.77 a.4.5.28 133988 1uhnA 189 67.00 a.39.1.5 99399 2bl0C 142 67.31 1qs7A 145 67.96 k.21.1.1 88373 1j55A 95 69.99 a.39.1.2 77078 1l0wA 580 70.73 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1psrA 100 70.89 a.39.1.2 17180 3f6oA 118 71.70 1cp3A 277 72.50 c.17.1.1 30992 1mucA 373 73.78 c.1.11.2,d.54.1.1 29236,38880 1jdfA 447 74.15 c.1.11.2,d.54.1.1 62897,62898 3hoaA 509 74.38 2di4A 238 74.98 a.269.1.1 131522 2nqlA 388 75.47 1wdcC 156 75.83 a.39.1.5 17317 1z8fA 228 76.23 3f6vA 151 77.87 1vrkA 148 78.12 k.21.1.1 46451 2wbrA 89 78.46 2h61A 92 78.89 a.39.1.2 136169 1r1uA 106 80.08 a.4.5.5 104771 1f16A 192 81.26 f.1.4.1 43400 1rec 201 81.65 1omrA 201 82.99 a.39.1.5 93349 3draB 390 83.17 2vbfA 570 83.31 2q5cA 196 84.66 1yiiA 320 85.39 1mgpA 313 85.61 c.119.1.1 79098 1kczA 413 86.52 c.1.11.2,d.54.1.1 68451,68452 3ct2A 382 86.84 1qtxA 148 87.98 k.21.1.1 88375 2pgwA 384 88.48 1r1tA 122 89.37 a.4.5.5 104769 1gu2A 124 89.62 a.3.1.1 76348 2f3yA 148 89.82 a.39.1.5 146994