# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rxqA	178	1.687	a.213.1.1	105118
2g7zA	282	8.613		
1hkqA	132	9.562	a.4.5.10	83555
1m41A	380	10.12	c.1.16.4	78595
1s4qA	228	10.85	c.37.1.1	98507
2od5A	116	11.05	a.4.5.70	148736
1a6sA	87	11.89	a.61.1.4	18134
3lsgA	103	14.61		
1z6gA	218	15.44		
1scmB	145	15.89	a.39.1.5	17304
2hydA	578	17.09	c.37.1.12,f.37.1.1	136875,136876
3go2A	409	17.64		
2oo6A	409	19.46		
2r2iA	198	19.90		
1qmgA	524	20.88	a.100.1.2,c.2.1.6	18785,30182
1w3wA	327	22.32		
1sfxA	109	23.13	a.4.5.50	105505
2jl1A	287	23.48		
2qgyA	391	24.70		
1ngkA	128	30.88	a.1.1.1	85673
1ofuA	320	31.23	c.32.1.1,d.79.2.1	86972,86973
3mkcA	394	31.78		
1alvA	173	33.61	a.39.1.8	17370
1wdcB	156	34.65	a.39.1.5	17302
1uqtA	482	34.84	c.87.1.6	99794
3gy1A	408	35.72		
2zhjA	322	36.39		
1z1dA	103	38.16	a.4.5.16	124351
1ug3A	339	38.94	a.118.1.14,a.118.1.14	119671,119672
2an9A	207	40.65	c.37.1.1	127037
2zkzA	99	41.93		
1ub9A	100	45.40	a.4.5.28	99159
2zfdA	226	46.54	a.39.1.5	154406
3i7aA	281	47.46		
1n4qB	377	51.49	a.102.4.3	91636
2mnr	357	52.51		
1kk8B	139	54.21	a.39.1.5	77430
3c8nA	356	55.93		
1z8fA	228	57.63		
1vqzA	341	58.01	d.224.1.3,d.104.1.3	120426,120427
3dfhA	394	60.38		
1rvkA	382	65.69	c.1.11.2,d.54.1.1	97928,97929
2gb7A	305	66.39		
1i4aA	318	67.09	a.65.1.1	61681
1dw0A	112	68.14	a.3.1.1	15911
1nqkA	381	69.43	c.1.16.4	92050
3gw2A	108	72.59		
1wsuA	124	73.17	a.4.5.35,a.4.5.35	121245,121246
3jthA	98	73.85		
1n00A	321	74.38	a.65.1.1	85241
3draB	390	75.78		
1znwA	207	77.16	c.37.1.1	125412
1r1uA	106	78.01	a.4.5.5	104771
1yiiA	320	78.70		
1mixA	206	79.38	a.11.2.1,b.55.1.5	79166,79167
3gqeA	168	80.93		
1ec7A	446	87.89	c.1.11.2,d.54.1.1	29218,38862
1s69A	124	88.50	a.1.1.1	105305