# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rxqA	178	1.810	a.213.1.1	105118
1m41A	380	5.446	c.1.16.4	78595
2g7zA	282	7.439		
1a6sA	87	8.559	a.61.1.4	18134
1s4qA	228	9.945	c.37.1.1	98507
1hkqA	132	10.83	a.4.5.10	83555
2od5A	116	13.16	a.4.5.70	148736
2oo6A	409	14.13		
3go2A	409	14.51		
3lsgA	103	15.06		
1z6gA	218	16.89		
1w3wA	327	17.37		
3mkcA	394	18.27		
1sfxA	109	19.74	a.4.5.50	105505
2r2iA	198	20.13		
2jl1A	287	20.84		
2hydA	578	21.07	c.37.1.12,f.37.1.1	136875,136876
1ofuA	320	23.48	c.32.1.1,d.79.2.1	86972,86973
1scmB	145	27.98	a.39.1.5	17304
1qmgA	524	28.98	a.100.1.2,c.2.1.6	18785,30182
3gy1A	408	30.42		
1nqkA	381	34.43	c.1.16.4	92050
2zhjA	322	35.14		
3c8nA	356	38.04		
2qgyA	391	38.73		
1ngkA	128	38.92	a.1.1.1	85673
2zkzA	99	39.58		
1ub9A	100	39.76	a.4.5.28	99159
1wsuA	124	40.63	a.4.5.35,a.4.5.35	121245,121246
3i7aA	281	41.47		
3dfhA	394	45.60		
1uqtA	482	48.84	c.87.1.6	99794
2an9A	207	49.46	c.37.1.1	127037
1alvA	173	49.99	a.39.1.8	17370
2zfdA	226	50.08	a.39.1.5	154406
2pgwA	384	52.47		
1z1dA	103	54.63	a.4.5.16	124351
2mnr	357	57.65		
1n4qB	377	57.67	a.102.4.3	91636
1vqzA	341	58.01	d.224.1.3,d.104.1.3	120426,120427
1z8fA	228	61.44		
3gw2A	108	61.62		
1gt1A	159	62.02	b.60.1.1	90515
1rvkA	382	63.41	c.1.11.2,d.54.1.1	97928,97929
1ug3A	339	63.86	a.118.1.14,a.118.1.14	119671,119672
1mgpA	313	64.94	c.119.1.1	79098
1r1uA	106	66.97	a.4.5.5	104771
1dzkA	157	68.28	b.60.1.1	27096
3draB	390	68.86		
3jthA	98	74.04		
1i4aA	318	74.70	a.65.1.1	61681
1wdcB	156	75.15	a.39.1.5	17302
1znwA	207	76.65	c.37.1.1	125412
1dw0A	112	77.14	a.3.1.1	15911
1cp3A	277	78.48	c.17.1.1	30992
2oqgA	114	79.58		
1a3yA	149	79.91	b.60.1.1	27110
1yiiA	320	83.78		
1mixA	206	84.50	a.11.2.1,b.55.1.5	79166,79167
3gqeA	168	87.25		
2qvcA	313	88.75