# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rxqA	178	2.251	a.213.1.1	105118
1m41A	380	6.930	c.1.16.4	78595
1a6sA	87	7.917	a.61.1.4	18134
2g7zA	282	8.940		
1s4qA	228	9.716	c.37.1.1	98507
2od5A	116	10.33	a.4.5.70	148736
2r2iA	198	10.92		
3go2A	409	11.94		
1hkqA	132	13.55	a.4.5.10	83555
2oo6A	409	13.93		
1z6gA	218	14.75		
2hydA	578	15.38	c.37.1.12,f.37.1.1	136875,136876
1w3wA	327	16.33		
3lsgA	103	16.62		
1sfxA	109	19.11	a.4.5.50	105505
2qgyA	391	20.14		
1ofuA	320	21.31	c.32.1.1,d.79.2.1	86972,86973
1alvA	173	24.29	a.39.1.8	17370
2zhjA	322	25.59		
1ngkA	128	25.88	a.1.1.1	85673
2jl1A	287	26.46		
1scmB	145	28.02	a.39.1.5	17304
3mkcA	394	28.28		
3gy1A	408	31.60		
2an9A	207	32.45	c.37.1.1	127037
2zkzA	99	34.04		
1qmgA	524	37.45	a.100.1.2,c.2.1.6	18785,30182
1z1dA	103	40.78	a.4.5.16	124351
1ug3A	339	42.03	a.118.1.14,a.118.1.14	119671,119672
1ub9A	100	42.23	a.4.5.28	99159
1uqtA	482	42.31	c.87.1.6	99794
1z8fA	228	47.78		
1znwA	207	50.13	c.37.1.1	125412
2mnr	357	51.96		
3c8nA	356	52.97		
1wdcB	156	53.31	a.39.1.5	17302
3dfhA	394	54.27		
3jthA	98	54.61		
2wbrA	89	57.12		
1wsuA	124	57.12	a.4.5.35,a.4.5.35	121245,121246
1r1uA	106	59.36	a.4.5.5	104771
1n00A	321	61.61	a.65.1.1	85241
2zfdA	226	61.99	a.39.1.5	154406
1cznA	169	65.20	c.23.5.1	31181
1i4aA	318	65.61	a.65.1.1	61681
1rvkA	382	66.07	c.1.11.2,d.54.1.1	97928,97929
1yiiA	320	66.49		
1vqzA	341	67.13	d.224.1.3,d.104.1.3	120426,120427
2gb7A	305	68.01		
1nqkA	381	69.13	c.1.16.4	92050
2ki5A	366	69.73	c.37.1.1	31862
1dw0A	112	71.92	a.3.1.1	15911
3i7aA	281	72.87		
1qhiA	366	73.55	c.37.1.1	31860
1axnA	323	74.91	a.65.1.1	18149
1qnf	484	75.45		
1n4qB	377	76.44	a.102.4.3	91636
3gw2A	108	79.03		
1ec7A	446	79.73	c.1.11.2,d.54.1.1	29218,38862
3draB	390	82.08		
1aj5A	173	82.09	a.39.1.8	17367
2jhmF	218	82.70		
1mixA	206	84.10	a.11.2.1,b.55.1.5	79166,79167
1gt1A	159	86.46	b.60.1.1	90515
1cp3A	277	87.81	c.17.1.1	30992
1dzkA	157	89.12	b.60.1.1	27096
1kk8B	139	89.27	a.39.1.5	77430