# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1n4qB 377 1.098 a.102.4.3 91636 3fy1A 395 1.392 2g7zA 282 2.165 1eu8A 409 2.819 c.94.1.1 59502 1zbpA 273 3.092 e.61.1.1 124861 1s4qA 228 3.141 c.37.1.1 98507 1z6gA 218 3.958 1y1xA 191 4.686 a.39.1.8 116374 2h6fB 437 4.761 a.102.4.3 136186 1nqkA 381 5.669 c.1.16.4 92050 1alvA 173 5.989 a.39.1.8 17370 1rxqA 178 6.393 a.213.1.1 105118 1mvwB 145 7.249 i.15.1.1 79524 1wdcB 156 7.517 a.39.1.5 17302 3mkcA 394 7.651 1wsuA 124 10.08 a.4.5.35,a.4.5.35 121245,121246 1aj5A 173 10.44 a.39.1.8 17367 2f2uA 402 10.85 3euvB 427 11.28 2h2zA 306 11.71 2zc8A 369 12.72 3cs1A 219 13.56 2oo6A 409 13.73 1jndA 420 13.86 c.1.8.5,d.26.3.1 71757,71758 3kheA 191 13.86 1rvkA 382 15.04 c.1.11.2,d.54.1.1 97928,97929 3lsgA 103 15.37 2zfdA 226 15.65 a.39.1.5 154406 2r3sA 335 15.65 1g8iA 190 15.65 a.39.1.5 60363 1hjxA 362 15.74 c.1.8.5,d.26.3.1 83512,83513 1qmgA 524 15.91 a.100.1.2,c.2.1.6 18785,30182 1hkqA 132 16.12 a.4.5.10 83555 3gf3A 588 18.84 3draB 390 18.91 3i5gC 159 20.98 1a6sA 87 22.11 a.61.1.4 18134 3fy4A 537 22.95 2vsgA 358 23.10 h.4.1.1 45780 3k21A 191 23.26 2v36B 193 24.11 2uzjA 253 24.48 1w3wA 327 25.67 1tn6B 437 26.03 a.102.4.3 112528 1ux5A 411 26.05 a.207.1.1 100144 1exrA 148 26.25 a.39.1.5 17299 2pgwA 384 26.55 1scmB 145 26.75 a.39.1.5 17304 3ik4A 365 28.29 1mvwC 147 29.40 i.15.1.1 79525 3d5lA 221 29.52 3k9tA 435 29.57 2vx5A 396 29.84 1y42X 392 29.97 1znwA 207 30.10 c.37.1.1 125412 3hibA 318 30.36 2od5A 116 31.13 a.4.5.70 148736 2fpqA 444 33.62 1np8A 159 34.23 a.39.1.8 92022 1o7dA 298 34.27 c.6.2.1 86641 1s1eA 224 35.89 a.39.1.5 112007 1lokA 291 37.02 c.56.5.4 78122 2dt8A 280 37.22 1zodA 433 37.48 c.67.1.4 125437 1uouA 474 37.66 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1hqvA 191 38.16 a.39.1.8 61160 2ovkC 159 38.27 1t3cA 421 38.70 d.92.1.7 106343 1cll 148 39.84 1auiB 169 41.19 a.39.1.5 17325 1ej3A 191 41.38 a.39.1.5 17259 1j09A 468 41.44 a.97.1.1,c.26.1.1 77025,77026 1bk6A 422 41.53 a.118.1.1 19133 2qgyA 391 43.02 2rhsA 294 43.04 3go2A 409 43.06 1hzoA 271 43.65 e.3.1.1 71092 1qnf 484 43.91 2auwA 170 44.19 a.35.1.10,d.331.1.1 127339,127340 1q2wA 308 44.26 b.47.1.4 88355 1pfoA 500 44.69 f.9.1.1 43826 1vf8A 377 45.52 c.1.8.5,d.26.3.1 120029,120030 1jf2A 195 49.06 a.39.1.5 62930 2ix4A 431 49.20 c.95.1.1,c.95.1.1 137759,137760 1ug3A 339 50.50 a.118.1.14,a.118.1.14 119671,119672 2zndA 172 51.25 3fw9A 495 51.31 1rroA 108 51.84 a.39.1.4 17195 2w9mA 578 52.06 1igwA 434 53.50 c.1.12.7 62370 1ulyA 192 53.92 a.4.5.58 113297 1z1dA 103 56.06 a.4.5.16 124351 1ofuA 320 56.82 c.32.1.1,d.79.2.1 86972,86973 2ii2A 310 57.06 3fcrA 458 58.35 1sl8A 191 58.82 a.39.1.5 112099 2p8bA 369 59.53 3boqA 160 60.08 2dkhA 639 60.69 2ae2A 260 62.33 c.2.1.2 29945 1ppjB 439 62.53 d.185.1.1,d.185.1.1 104254,104255 2aaoA 166 63.28 3jr7A 298 64.04 2vprA 207 64.16 3gw2A 108 64.33 1jetA 517 65.89 c.94.1.1 35718 3dfhA 394 66.55 1attA 421 67.63 e.1.1.1 42638 2scpA 174 67.86 a.39.1.5 17256 3glvA 143 69.05 1a2xA 159 70.16 a.39.1.5 17251 2eb4A 267 70.51 1b7yA 350 70.79 d.104.1.1 40776 1sfxA 109 71.21 a.4.5.50 105505 2zkzA 99 71.26 1ifa 158 71.68 1v9dA 340 73.09 a.207.1.1 100535 1ez1A 392 74.39 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1jpdX 324 75.72 c.1.11.2,d.54.1.1 67014,67015 2o7oA 207 76.61 a.4.1.9,a.121.1.1 138930,138931 1a7lA 389 77.20 c.94.1.1 35787 1nu5A 370 79.61 c.1.11.2,d.54.1.1 92183,92184 1omrA 201 79.66 a.39.1.5 93349 1g6aA 271 80.96 e.3.1.1 42704 1mgpA 313 81.84 c.119.1.1 79098 2qvsB 310 82.79 2qpnA 287 83.47 2wgeA 416 83.71 2ha9A 446 83.78 c.7.1.5 147251 2f5uA 447 87.36 1dwkA 156 87.71 a.35.1.4,d.72.1.1 17075,39606 2nn6B 249 88.04 d.14.1.4,d.101.1.1 148297,148298 1e5uI 187 88.16 b.1.14.1,d.169.1.3 22372,42441 1ozhA 566 88.69 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 2og9A 393 89.01 1gqnA 252 89.24 c.1.10.1 90514 5palA 109 89.32 a.39.1.4 17215 3fozA 316 89.38