# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rxqA	178	2.680	a.213.1.1	105118
1pmi	440	7.317		
1a6sA	87	14.71	a.61.1.4	18134
1vqzA	341	23.20	d.224.1.3,d.104.1.3	120426,120427
1z1dA	103	25.44	a.4.5.16	124351
2g7zA	282	31.86		
1efuB	282	38.68	d.43.1.1,a.5.2.2,d.43.1.1	38677,58975,58976
1qgoA	264	38.98	c.92.1.2	35596
1scmB	145	39.79	a.39.1.5	17304
1gzsB	165	41.70	a.168.1.1	76425
1ofuA	320	46.63	c.32.1.1,d.79.2.1	86972,86973
2qjjA	402	46.94		
3go2A	409	47.31		
2di4A	238	48.94	a.269.1.1	131522
1wsuA	124	50.22	a.4.5.35,a.4.5.35	121245,121246
3draB	390	51.02		
2oo6A	409	52.16		
3gy1A	408	52.95		
3gf4A	390	53.26		
1ga3A	113	53.44	a.26.1.2	60411
1m41A	380	56.97	c.1.16.4	78595
1i6iA	366	57.07	c.37.1.9	61844
1j09A	468	58.63	a.97.1.1,c.26.1.1	77025,77026
3gtzA	124	59.72		
1wdcB	156	60.45	a.39.1.5	17302
2r2iA	198	60.93		
2jl1A	287	61.46		
2hydA	578	62.87	c.37.1.12,f.37.1.1	136875,136876
3dlbA	685	63.92		
1f9vA	347	63.94	c.37.1.9	59745
1z6gA	218	65.56		
2w58A	202	66.50		
1eu8A	409	67.56	c.94.1.1	59502
2ovkC	159	69.09		
3mkcA	394	69.48		
1ec7A	446	72.40	c.1.11.2,d.54.1.1	29218,38862
1jd1A	129	72.56	d.79.1.1	62890
1iygA	133	75.35	a.118.8.1	76947
1i5sA	367	75.40	c.37.1.9	61822
1mgpA	313	75.69	c.119.1.1	79098
1s4qA	228	76.92	c.37.1.1	98507
1ia0K	394	77.16	i.10.1.1	71167
2zfoD	155	77.95		
2wcxA	537	81.54		
2vk8A	563	84.50		
3gqeA	168	87.84		
1qnf	484	88.83