# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1rwyA 109 1.507 a.39.1.4 98002 1xvjA 109 1.546 3f45A 109 2.206 1a87 321 2.263 1pvaA 110 2.370 a.39.1.4 17207 2pvbA 107 3.615 a.39.1.4 17205 1cwwA 102 3.709 a.77.1.3 18434 3dfdA 157 3.890 3kluA 157 4.163 3i5gC 159 4.535 4cpvA 108 6.355 a.39.1.4 17198 1qwgA 251 6.828 c.1.27.1 96473 2r44A 331 7.222 1r1tA 122 7.361 a.4.5.5 104769 2ovkC 159 8.165 5palA 109 8.228 a.39.1.4 17215 2ygsA 92 8.338 a.77.1.3 18431 3e96A 316 8.955 1auiB 169 9.638 a.39.1.5 17325 1mvwB 145 13.51 i.15.1.1 79524 1smtA 122 13.62 a.4.5.5 16109 1b8rA 108 13.72 a.39.1.4 17201 1exrA 148 15.29 a.39.1.5 17299 2h6fB 437 16.29 a.102.4.3 136186 2o5gA 148 16.47 a.39.1.5 148598 3f6oA 118 16.67 1tn6B 437 17.77 a.102.4.3 112528 1b9aA 108 17.78 a.39.1.4 17204 1a75A 108 18.62 a.39.1.4 17216 1rxqA 178 20.22 a.213.1.1 105118 3fkrA 309 21.45 2aaoA 166 21.68 1snnA 227 21.86 d.115.1.2 105821 1es4A 262 22.01 e.3.1.1 42683 2a9iA 113 22.31 2aifA 135 23.05 d.79.3.1 146055 3i76A 244 23.06 1whtA 256 23.09 c.69.1.5 34646 1es2A 262 23.62 e.3.1.1 42680 2ccmA 191 25.10 1vrkA 148 25.49 k.21.1.1 46451 3if5A 456 25.50 1idrA 136 25.66 a.1.1.1 62301 1oxjA 173 27.04 a.60.1.2,a.118.1.13 87517,87518 3hjnA 197 27.51 1wdcC 156 31.15 a.39.1.5 17317 2pgeA 377 31.79 1g33A 73 32.71 a.39.1.4 65121 1ggzA 148 33.64 a.39.1.5 70176 1f4tA 368 34.88 a.104.1.1 18973 1ub3A 220 35.27 c.1.10.1 88395 2r2iA 198 35.79 1kk8B 139 36.12 a.39.1.5 77430 1vqzA 341 37.32 d.224.1.3,d.104.1.3 120426,120427 3fkkA 309 39.12 3gbgA 276 39.81 3etfA 462 40.60 1cy5A 97 40.96 a.77.1.3 18430 1es5A 262 41.05 e.3.1.1 42679 2obhA 143 43.16 a.39.1.5 148716 1skf 262 44.22 1mdl 359 44.88 1r1uA 106 45.82 a.4.5.5 104771 2jk8A 302 46.84 2fkiA 126 49.06 d.198.3.1 133657 1pszA 303 50.58 c.92.2.2 35600 1f6yA 262 51.05 c.1.21.2 29673 3ed5A 238 52.18 3iuoA 122 52.47 2qacA 146 52.67 1vh0A 161 53.43 c.116.1.3 100626 3lerA 301 53.96 1vcvA 226 54.34 c.1.10.1 119988 2ff7A 247 54.45 c.37.1.12 133377 2f3yA 148 54.84 a.39.1.5 146994 1toaA 313 55.31 c.92.2.2 35598 1zh5A 195 56.50 a.4.5.46,d.58.7.1 125073,125074 1esiA 262 56.64 e.3.1.1 42682 1yioA 208 58.06 a.4.6.2,c.23.1.1 123326,123327 1ppjB 439 58.61 d.185.1.1,d.185.1.1 104254,104255 2ov5A 261 59.28 1s1eA 224 59.47 a.39.1.5 112007 1dlwA 116 60.55 a.1.1.1 14982 1j9bA 141 60.62 c.47.1.12 66459 1br1B 150 60.66 a.39.1.5 17309 3bi8A 291 61.56 1gvjA 146 61.66 a.4.5.21 90525 3jthA 98 63.37 2sttA 96 63.99 a.4.5.21 16163 1dlyA 164 64.41 a.1.1.1 14983 3m5vA 301 64.63 1w6kA 732 64.97 a.102.4.2,a.102.4.2 114271,114272 3guiA 164 65.35 2x59A 761 65.68 1v9mA 323 67.05 f.40.1.1 100543 1jf0A 195 68.03 a.39.1.5 62926 3euvB 427 68.10 3cnhA 200 68.23 1qtxA 148 68.26 k.21.1.1 88375 1sxjC 340 68.55 a.80.1.1,c.37.1.20 106085,106086 3dw0A 294 69.96 2purA 292 70.49 1c3pA 375 70.98 c.42.1.2 32606 2x1yA 761 71.57 2bl0C 142 71.78 2ec4A 178 74.94 1bcsA 263 75.20 c.69.1.5 34647 3i7aA 281 77.47 2gkmA 136 77.60 1r0mA 375 79.12 c.1.11.2,d.54.1.1 104747,104748 1pq1A 196 79.70 f.1.4.1 94986 1qs7A 145 80.12 k.21.1.1 88373 2v4iB 213 80.79 2qq9A 226 82.62 1g8iA 190 82.71 a.39.1.5 60363 1mzhA 225 82.82 c.1.10.1 79698 1h8aC 128 83.95 a.4.1.3,a.4.1.3 65731,65732 3ih8A 456 84.26 3fwbA 161 84.37 3hguA 369 84.57 1rkpA 326 84.61 a.211.1.2 97620 1so2A 420 85.37 a.211.1.2 98936 1qksA 567 85.94 a.3.1.2,b.70.2.1 15951,27710 3it4B 205 86.11 1n7kA 234 86.29 c.1.10.1 85374 1k0fA 277 86.86 c.92.2.2 71974 3f6wA 83 87.84