Best Alignments for T0555

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1a6sA	1.1617e+01	1a6sA/T0555-1a6sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.61.1.4
2od5A	1.3495e+01	2od5A/T0555-2od5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.70
2r2iA	1.6829e+01	2r2iA/T0555-2r2iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zfdA	2.0561e+01	2zfdA/T0555-2zfdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1tvnA	2.1499e+01	1tvnA/T0555-1tvnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.3
1alvA	2.3035e+01	1alvA/T0555-1alvA-t06-local-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.8
1uhnA	2.5648e+01	1uhnA/T0555-1uhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1u2wA	2.5989e+01	1u2wA/T0555-1u2wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.5
1k94A	2.8010e+01	1k94A/T0555-1k94A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.8
1k6xA	2.9895e+01	1k6xA/T0555-1k6xA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.2.1.2
2fozA	3.1254e+01	2fozA/T0555-2fozA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qorA	3.7783e+01	2qorA/T0555-2qorA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1owlA	3.9778e+01	1owlA/T0555-1owlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.99.1.1 c.28.1.1
1kk8B	4.1288e+01	1kk8B/T0555-1kk8B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1wsuA	4.2238e+01	1wsuA/T0555-1wsuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.35 a.4.5.35
1s1eA	4.2900e+01	1s1eA/T0555-1s1eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2j0fA	4.4022e+01	2j0fA/T0555-2j0fA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wdcB	4.5132e+01	1wdcB/T0555-1wdcB-t06-local-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.5
2zkzA	4.6772e+01	2zkzA/T0555-2zkzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ct9A	4.8657e+01	2ct9A/T0555-2ct9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001