# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a6sA 87 4.720 a.61.1.4 18134 2zfdA 226 6.357 a.39.1.5 154406 1k6xA 352 6.977 c.2.1.2 68238 1u2wA 122 7.676 a.4.5.5 119487 1owlA 484 7.973 a.99.1.1,c.28.1.1 93647,93648 2od5A 116 9.227 a.4.5.70 148736 1tvnA 293 9.865 c.1.8.3 119360 2r2iA 198 9.889 2j0fA 482 11.06 2zkzA 99 17.13 2fozA 347 17.39 1k94A 165 18.10 a.39.1.8 68333 2dejA 350 18.94 3jy6A 276 19.37 1uhnA 189 19.67 a.39.1.5 99399 1alvA 173 22.66 a.39.1.8 17370 1wsuA 124 22.99 a.4.5.35,a.4.5.35 121245,121246 2qorA 204 23.17 2gb7A 305 23.45 1hp1A 516 24.44 d.114.1.1,d.159.1.2 70976,70977 1xrsA 516 31.90 c.1.19.4 115883 1gu2A 124 32.51 a.3.1.1 76348 2bpqA 373 34.00 3gx1A 130 34.43 2of7A 260 34.97 1s1eA 224 37.12 a.39.1.5 112007 3edtB 283 37.78 2fkiA 126 38.17 d.198.3.1 133657 1wlzA 105 39.10 a.39.1.7 121024 1gky 187 39.57 2j5aA 110 39.91 d.58.14.1 147886 1lliA 92 41.23 a.35.1.2 17025 2pjpA 121 41.81 1z1dA 103 42.51 a.4.5.16 124351 1sfxA 109 42.52 a.4.5.50 105505 1ks9A 291 43.76 a.100.1.7,c.2.1.6 68857,68858 1gt1A 159 44.30 b.60.1.1 90515 1i4aA 318 45.51 a.65.1.1 61681 1uouA 474 46.87 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1o7dA 298 46.93 c.6.2.1 86641 1kk8B 139 47.91 a.39.1.5 77430 3ecoA 139 47.98 1vi9A 299 48.54 c.72.1.5 100750 2hyvA 308 50.02 3gdwA 139 50.04 1cqmA 101 51.61 d.58.14.1 39321 1v32A 101 53.20 a.42.1.1 100277 2x5yA 173 55.28 7a3hA 303 55.50 c.1.8.3 28817 1w3wA 327 56.29 3e61A 277 58.40 2j07A 420 58.95 a.99.1.1,c.28.1.1 137891,137892 1ex7A 186 60.28 c.37.1.1 59537 2w3cA 577 63.86 2p22C 192 64.23 3c1vA 113 65.51 a.39.1.2 155867 1r1uA 106 65.66 a.4.5.5 104771 1q2hA 69 66.17 a.34.4.1 104498 1wv2A 265 67.96 c.1.31.1 114910 2zr1A 258 68.09 2h3hA 313 68.95 1vg0A 650 69.37 c.3.1.3,d.16.1.6 108596,108597 3draB 390 71.49 1wdcB 156 73.51 a.39.1.5 17302 3c4bA 265 75.10 2a1vA 144 75.21 d.198.3.1 126019 3di5A 168 75.57 2ii2A 310 76.40 1vi0A 206 77.23 a.4.1.9,a.121.1.1 100720,100721 1ub0A 258 77.42 c.72.1.2 88394 2i7aA 174 77.97 2p0lA 288 78.37 d.104.1.3 149135 2bzeA 153 80.33 b.34.21.1 146224 1xo5A 183 80.92 a.39.1.5 115680 2nqwA 93 83.65 d.145.1.4 148346 2ct9A 208 84.06 1dwkA 156 84.36 a.35.1.4,d.72.1.1 17075,39606 2c5wB 385 84.41 e.3.1.1 129958 1dw0A 112 84.49 a.3.1.1 15911 2gokA 429 84.87 b.92.1.10,c.1.9.17 147145,147146 2h7bA 105 85.48 a.277.1.1 147237 1uu1A 335 85.94 c.67.1.1 99993