# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a6sA 87 1.829 a.61.1.4 18134 1owlA 484 7.800 a.99.1.1,c.28.1.1 93647,93648 2od5A 116 9.094 a.4.5.70 148736 1u2wA 122 10.30 a.4.5.5 119487 2fozA 347 13.40 1vg0A 650 13.49 c.3.1.3,d.16.1.6 108596,108597 2j0fA 482 13.87 1tvnA 293 17.20 c.1.8.3 119360 2gb7A 305 17.84 3edtB 283 18.60 1alvA 173 19.74 a.39.1.8 17370 2w3cA 577 19.79 1wsuA 124 20.06 a.4.5.35,a.4.5.35 121245,121246 2zkzA 99 20.60 2qorA 204 20.65 2dejA 350 23.37 1xrsA 516 23.77 c.1.19.4 115883 3jy6A 276 24.37 1k94A 165 24.65 a.39.1.8 68333 1gky 187 25.79 1q59A 172 30.13 f.1.4.1 95881 1k6xA 352 30.83 c.2.1.2 68238 2zfdA 226 31.20 a.39.1.5 154406 2j5aA 110 32.63 d.58.14.1 147886 1hp1A 516 33.89 d.114.1.1,d.159.1.2 70976,70977 2of7A 260 35.10 2j07A 420 35.18 a.99.1.1,c.28.1.1 137891,137892 2pjpA 121 35.48 3ecoA 139 36.10 1ex7A 186 37.26 c.37.1.1 59537 1dw0A 112 38.84 a.3.1.1 15911 3c1vA 113 39.40 a.39.1.2 155867 3lsgA 103 39.43 1z1dA 103 39.75 a.4.5.16 124351 2r2iA 198 41.10 1gu2A 124 41.51 a.3.1.1 76348 1ks9A 291 44.15 a.100.1.7,c.2.1.6 68857,68858 1hr6A 475 44.68 d.185.1.1,d.185.1.1 61164,61165 1z1bA 356 47.25 d.10.1.4,d.163.1.1 124346,124347 1gt1A 159 47.99 b.60.1.1 90515 1vi0A 206 48.76 a.4.1.9,a.121.1.1 100720,100721 1v32A 101 49.96 a.42.1.1 100277 1uhnA 189 51.47 a.39.1.5 99399 3gx1A 130 52.31 1uouA 474 52.44 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2p0lA 288 54.64 d.104.1.3 149135 1wlzA 105 55.41 a.39.1.7 121024 1zq9A 285 56.17 c.66.1.24 125505 1wv2A 265 56.36 c.1.31.1 114910 2bpqA 373 56.64 1sfxA 109 57.32 a.4.5.50 105505 2p22C 192 57.51 2yxlA 450 58.34 1vi9A 299 59.27 c.72.1.5 100750 1cqmA 101 59.77 d.58.14.1 39321 1lvaA 258 60.42 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1o7dA 298 60.82 c.6.2.1 86641 1u19A 349 60.97 f.13.1.2 112953 2j4dA 525 61.67 2i7aA 174 63.38 1np7A 489 63.50 a.99.1.1,c.28.1.1 80677,80678 3a2kA 464 64.61 2c5wB 385 66.85 e.3.1.1 129958 1q2hA 69 68.82 a.34.4.1 104498 1vhuA 211 71.44 c.50.1.2 100703 2h7bA 105 72.98 a.277.1.1 147237 2a1vA 144 73.79 d.198.3.1 126019 7a3hA 303 74.60 c.1.8.3 28817 2x5yA 173 74.61 1r1tA 122 75.00 a.4.5.5 104769 2fkiA 126 79.72 d.198.3.1 133657 3di5A 168 80.23 3c4bA 265 80.91 3gdwA 139 81.96 2k6mS 67 82.76 3lhqA 220 83.78 1xkzA 255 84.16 e.3.1.1 115426 2ct9A 208 84.64 1tezA 474 86.12 a.99.1.1,c.28.1.1 112409,112410 2r8tA 338 87.32 2jrmA 65 87.36 3gw2A 108 87.53 1s1eA 224 87.64 a.39.1.5 112007