# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2zfdA 226 0.6121 a.39.1.5 154406 1a6sA 87 0.6627 a.61.1.4 18134 2r2iA 198 1.857 2fozA 347 2.032 3c1vA 113 2.164 a.39.1.2 155867 1alvA 173 2.728 a.39.1.8 17370 2zkzA 99 3.229 1y1xA 191 3.656 a.39.1.8 116374 1k94A 165 4.000 a.39.1.8 68333 1uhnA 189 4.163 a.39.1.5 99399 2pjpA 121 4.408 2od5A 116 5.950 a.4.5.70 148736 1xo5A 183 5.978 a.39.1.5 115680 1hqvA 191 6.360 a.39.1.8 61160 2q91A 101 6.677 a.39.1.2 150135 1s1eA 224 6.938 a.39.1.5 112007 1wsuA 124 7.187 a.4.5.35,a.4.5.35 121245,121246 2j0fA 482 8.669 2i7aA 174 8.887 1ggzA 148 8.904 a.39.1.5 70176 2gb7A 305 9.356 1exrA 148 10.31 a.39.1.5 17299 1ks9A 291 10.55 a.100.1.7,c.2.1.6 68857,68858 1u2wA 122 11.45 a.4.5.5 119487 1sfxA 109 12.26 a.4.5.50 105505 1hr6A 475 12.50 d.185.1.1,d.185.1.1 61164,61165 2zndA 172 13.20 1dw0A 112 13.39 a.3.1.1 15911 2ct9A 208 15.06 1kk8B 139 16.32 a.39.1.5 77430 1dwkA 156 16.56 a.35.1.4,d.72.1.1 17075,39606 3gx1A 130 17.13 2f3yA 148 18.12 a.39.1.5 146994 3jy6A 276 18.45 1wlzA 105 18.97 a.39.1.7 121024 1gt1A 159 19.19 b.60.1.1 90515 3fwbA 161 19.42 1vi9A 299 19.73 c.72.1.5 100750 1uouA 474 19.98 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2woeA 299 20.02 1g8iA 190 20.36 a.39.1.5 60363 3gp2A 147 20.83 2wocA 299 20.97 1vrkA 148 21.32 k.21.1.1 46451 1auiB 169 21.63 a.39.1.5 17325 2bl0C 142 23.77 1wdcB 156 24.29 a.39.1.5 17302 1xrsA 516 24.94 c.1.19.4 115883 1avsA 90 25.94 a.39.1.5 17226 2v6qA 173 27.87 1njrA 284 28.52 c.50.1.2 103858 2h61A 92 28.77 a.39.1.2 136169 2j5aA 110 29.57 d.58.14.1 147886 1ub9A 100 29.59 a.4.5.28 99159 2a2mA 258 29.64 a.132.1.3 126039 2c5wB 385 30.56 e.3.1.1 129958 1yu5X 67 31.45 a.14.1.1 124039 1tvnA 293 31.59 c.1.8.3 119360 2obhA 143 31.84 a.39.1.5 148716 1w3wA 327 32.67 1topA 162 32.70 a.39.1.5 17223 1i4aA 318 33.16 a.65.1.1 61681 1gu2A 124 34.45 a.3.1.1 76348 1a4pA 96 34.95 a.39.1.2 17176 3lsgA 103 35.20 2gv5A 161 35.96 2nnnA 140 36.02 1ub0A 258 37.51 c.72.1.2 88394 2k6mS 67 37.70 1lvaA 258 39.07 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bpqA 373 39.15 2rdpA 150 39.44 5palA 109 40.39 a.39.1.4 17215 1qs7A 145 40.73 k.21.1.1 88373 1s3jA 155 40.76 a.4.5.28 98437 1owlA 484 40.78 a.99.1.1,c.28.1.1 93647,93648 1qtxA 148 41.01 k.21.1.1 88375 1gky 187 42.08 2bzeA 153 42.73 b.34.21.1 146224 2aajA 130 44.12 d.80.1.6 126481 3cr5X 92 44.13 a.39.1.2 156942 1k6xA 352 44.67 c.2.1.2 68238 2aaoA 166 46.31 2yxlA 450 47.10 3e6mA 161 47.79 2db9A 149 48.00 b.34.21.1 146482 1a2xA 159 49.31 a.39.1.5 17251 1pvaA 110 49.36 a.39.1.4 17207 1v32A 101 49.64 a.42.1.1 100277 1vi0A 206 50.22 a.4.1.9,a.121.1.1 100720,100721 2qorA 204 50.37 2sasA 185 50.39 a.39.1.5 17258 1lliA 92 50.80 a.35.1.2 17025 1jgsA 138 51.34 a.4.5.28 66683 2o5gA 148 51.40 a.39.1.5 148598 1rwyA 109 51.89 a.39.1.4 98002 1z1dA 103 52.12 a.4.5.16 124351 1ex7A 186 52.93 c.37.1.1 59537 1cqmA 101 53.47 d.58.14.1 39321 2zhjA 322 53.49 1hp1A 516 53.75 d.114.1.1,d.159.1.2 70976,70977 3di5A 168 53.95 1o7dA 298 54.32 c.6.2.1 86641 1uu1A 335 54.40 c.67.1.1 99993 2abqA 306 54.63 c.72.1.1 126528 3g3zA 145 55.78 1qzpA 68 56.02 a.14.1.1 96654 1wv2A 265 56.03 c.1.31.1 114910 1lhpA 312 56.36 c.72.1.5 77960 2scpA 174 56.89 a.39.1.5 17256 3a8rA 179 57.18 3daqA 292 57.55 2opoA 86 58.83 a.39.1.10 139209 3draB 390 59.57 1kcqA 104 59.94 d.109.1.1 68449 2p4pA 86 64.56 d.145.1.4 149217 1jcfA 344 65.22 c.55.1.1,c.55.1.1 62878,62879 2q3pA 112 65.98 d.58.4.4 139798 3ecoA 139 66.27 2va8A 715 66.38 2p0lA 288 67.08 d.104.1.3 149135 3e3rA 204 67.09 1vg0A 650 67.23 c.3.1.3,d.16.1.6 108596,108597 2i10A 202 67.77 a.4.1.9,a.121.1.1 136960,136961 1ujsA 88 67.85 a.14.1.1 99467 3c6cA 316 68.28 3cztX 92 68.35 3gdwA 139 69.18 2p13A 90 70.63 d.145.1.4 149152 2dejA 350 70.87 2nyxA 168 71.27 1r1uA 106 71.90 a.4.5.5 104771 1yiiA 320 73.14 1xnzA 264 74.08 d.127.1.1 115673 1yu8X 67 74.85 a.14.1.1 124044 4cpvA 108 75.10 a.39.1.4 17198 3iruA 277 76.01 2a1vA 144 76.27 d.198.3.1 126019 1u5iA 700 77.13 a.39.1.8,b.14.1.1,d.3.1.3 119547,119548,119549 2hyvA 308 77.53 2ggcA 263 78.35 d.127.1.1 135127 1z91A 147 79.18 a.4.5.28 124736 1m45A 148 79.31 a.39.1.5 78598 1h2kA 349 80.63 b.82.2.6 76572 1n00A 321 81.06 a.65.1.1 85241 2wmfA 581 81.10 2wmgA 581 81.53 2hpsA 186 81.64 2wmhA 581 82.41 2pvbA 107 82.45 a.39.1.4 17205 3kheA 191 83.37 2jrmA 65 84.38 1e8aA 91 84.70 a.39.1.2 17188 3dd7A 135 85.65 1gvjA 146 85.66 a.4.5.21 90525 1c24A 263 87.19 d.127.1.1 41148 1kfuL 699 88.26 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1aisB 200 89.11 a.74.1.2,a.74.1.2 18384,18385