# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u2wA	122	4.773	a.4.5.5	119487
1owlA	484	5.586	a.99.1.1,c.28.1.1	93647,93648
2od5A	116	5.595	a.4.5.70	148736
1k6xA	352	7.507	c.2.1.2	68238
2j0fA	482	7.964		
3jy6A	276	10.74		
1tvnA	293	12.75	c.1.8.3	119360
1a6sA	87	13.43	a.61.1.4	18134
1sfxA	109	14.81	a.4.5.50	105505
2zkzA	99	14.96		
3ecoA	139	18.39		
2fozA	347	19.58		
1wlzA	105	21.65	a.39.1.7	121024
2r2iA	198	21.81		
1hp1A	516	22.58	d.114.1.1,d.159.1.2	70976,70977
3gx1A	130	24.04		
2qorA	204	24.21		
1ljoA	77	25.58	b.38.1.1	73941
2gb7A	305	26.30		
2dejA	350	27.64		
1k94A	165	28.83	a.39.1.8	68333
3c4bA	265	30.40		
1uouA	474	30.83	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1gt1A	159	30.84	b.60.1.1	90515
1w3wA	327	33.23		
1kk8B	139	33.44	a.39.1.5	77430
2x5yA	173	33.79		
3lsgA	103	34.98		
3edtB	283	35.08		
2pjpA	121	35.45		
2yxlA	450	35.47		
1z1dA	103	36.37	a.4.5.16	124351
1gky	187	36.47		
2w3cA	577	36.70		
3e61A	277	36.72		
3bddA	142	37.15		
1r1uA	106	38.67	a.4.5.5	104771
3draB	390	38.99		
1alvA	173	39.27	a.39.1.8	17370
7a3hA	303	43.20	c.1.8.3	28817
2j5aA	110	44.51	d.58.14.1	147886
1v32A	101	45.10	a.42.1.1	100277
2bpqA	373	45.50		
1vhuA	211	46.59	c.50.1.2	100703
1z1bA	356	46.60	d.10.1.4,d.163.1.1	124346,124347
2hyvA	308	46.70		
2j07A	420	47.40	a.99.1.1,c.28.1.1	137891,137892
1gu2A	124	47.66	a.3.1.1	76348
1wsuA	124	48.65	a.4.5.35,a.4.5.35	121245,121246
2oqgA	114	50.57		
1i4aA	318	52.26	a.65.1.1	61681
1w53A	84	52.71	a.186.1.2	109175
2ajtA	500	54.49	b.43.2.2,c.85.1.2	126894,126895
2of7A	260	57.06		
2phpA	192	60.69	c.74.1.2	149474
2h7bA	105	60.88	a.277.1.1	147237
1ex7A	186	64.55	c.37.1.1	59537
1bj7A	156	67.17	b.60.1.1	27113
1cqmA	101	67.86	d.58.14.1	39321
2p4pA	86	67.90	d.145.1.4	149217
3gw2A	108	68.89		
1bl0A	129	70.17	a.4.1.8,a.4.1.8	16053,16054
1lliA	92	70.32	a.35.1.2	17025
2ct9A	208	71.02		
1uhnA	189	71.19	a.39.1.5	99399
2p0lA	288	71.61	d.104.1.3	149135
2gokA	429	72.49	b.92.1.10,c.1.9.17	147145,147146
2p13A	90	72.82	d.145.1.4	149152
1o7dA	298	76.12	c.6.2.1	86641
1yu5X	67	76.67	a.14.1.1	124039
1wdcB	156	77.70	a.39.1.5	17302
1zq9A	285	79.10	c.66.1.24	125505
1rw2A	152	80.00	a.118.19.1	97961
1r1tA	122	80.61	a.4.5.5	104769
2zhjA	322	86.77		
1ks9A	291	86.90	a.100.1.7,c.2.1.6	68857,68858
3f6oA	118	88.10		
2bzeA	153	88.23	b.34.21.1	146224
1dzkA	157	89.00	b.60.1.1	27096