# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u2wA	122	4.833	a.4.5.5	119487
1k6xA	352	5.358	c.2.1.2	68238
2od5A	116	5.890	a.4.5.70	148736
2j0fA	482	8.810		
1owlA	484	8.976	a.99.1.1,c.28.1.1	93647,93648
1a6sA	87	10.09	a.61.1.4	18134
1tvnA	293	11.44	c.1.8.3	119360
2zkzA	99	13.90		
3jy6A	276	15.13		
1wlzA	105	16.12	a.39.1.7	121024
1hp1A	516	16.23	d.114.1.1,d.159.1.2	70976,70977
1sfxA	109	16.42	a.4.5.50	105505
2r2iA	198	16.95		
2dejA	350	20.32		
2qorA	204	21.19		
3ecoA	139	23.10		
2x5yA	173	24.25		
2fozA	347	25.30		
2gb7A	305	25.61		
1uouA	474	27.50	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
1ljoA	77	28.04	b.38.1.1	73941
1w3wA	327	28.17		
1gt1A	159	29.22	b.60.1.1	90515
3c4bA	265	30.38		
1gu2A	124	32.72	a.3.1.1	76348
2pjpA	121	33.95		
3bddA	142	35.31		
2hyvA	308	35.38		
3draB	390	35.64		
3gx1A	130	35.76		
1gky	187	36.89		
3edtB	283	38.82		
1i4aA	318	39.20	a.65.1.1	61681
1k94A	165	39.56	a.39.1.8	68333
1kk8B	139	39.86	a.39.1.5	77430
1r1uA	106	40.15	a.4.5.5	104771
2w3cA	577	40.60		
3e61A	277	40.62		
1z1dA	103	42.25	a.4.5.16	124351
1alvA	173	45.14	a.39.1.8	17370
2oqgA	114	46.95		
1v32A	101	47.88	a.42.1.1	100277
3lsgA	103	48.02		
7a3hA	303	49.31	c.1.8.3	28817
1wsuA	124	49.38	a.4.5.35,a.4.5.35	121245,121246
2bpqA	373	50.84		
1uhnA	189	52.12	a.39.1.5	99399
1z1bA	356	53.50	d.10.1.4,d.163.1.1	124346,124347
1vhuA	211	56.38	c.50.1.2	100703
1bj7A	156	58.70	b.60.1.1	27113
1ks9A	291	60.50	a.100.1.7,c.2.1.6	68857,68858
2zhjA	322	61.64		
1dzkA	157	62.30	b.60.1.1	27096
2ct9A	208	62.63		
2j07A	420	63.95	a.99.1.1,c.28.1.1	137891,137892
2h7bA	105	65.11	a.277.1.1	147237
1ex7A	186	66.63	c.37.1.1	59537
2yxlA	450	67.74		
3g56A	195	69.31		
1chuA	540	69.62	a.7.3.1,c.3.1.4,d.168.1.1	16325,30424,42307
3gw2A	108	70.04		
2ii2A	310	70.71		
3f6oA	118	71.53		
3f6vA	151	73.46		
1q2hA	69	75.30	a.34.4.1	104498
1bl0A	129	76.57	a.4.1.8,a.4.1.8	16053,16054
2p0lA	288	77.43	d.104.1.3	149135
1lliA	92	78.11	a.35.1.2	17025
2nnnA	140	79.08		
2phpA	192	79.50	c.74.1.2	149474
1r1tA	122	80.09	a.4.5.5	104769
1cqmA	101	82.42	d.58.14.1	39321
1yu5X	67	82.70	a.14.1.1	124039
2zfdA	226	83.03	a.39.1.5	154406
1rw2A	152	83.07	a.118.19.1	97961
1o7dA	298	83.35	c.6.2.1	86641
2j5aA	110	83.73	d.58.14.1	147886
1a3yA	149	85.15	b.60.1.1	27110
3gdwA	139	87.06		
3f2kA	226	87.89		
2gokA	429	87.99	b.92.1.10,c.1.9.17	147145,147146