# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2gokA	429	10.18	b.92.1.10,c.1.9.17	147145,147146
2od5A	116	10.49	a.4.5.70	148736
1tvnA	293	11.05	c.1.8.3	119360
3e61A	277	12.98		
1a6sA	87	15.05	a.61.1.4	18134
1v32A	101	16.05	a.42.1.1	100277
2j5aA	110	16.16	d.58.14.1	147886
3lupA	285	16.25		
2r2iA	198	17.40		
1uhnA	189	23.44	a.39.1.5	99399
2qorA	204	24.78		
7a3hA	303	26.01	c.1.8.3	28817
2h3hA	313	30.55		
2fozA	347	32.37		
1vi9A	299	37.63	c.72.1.5	100750
1wv2A	265	38.19	c.1.31.1	114910
1wzdA	215	39.28	a.132.1.1	121493
1cqmA	101	41.97	d.58.14.1	39321
1wsuA	124	41.97	a.4.5.35,a.4.5.35	121245,121246
2zfdA	226	46.28	a.39.1.5	154406
2dfkA	402	46.97	a.87.1.1,b.55.1.1	145077,145078
1xkzA	255	47.14	e.3.1.1	115426
2dvwB	83	48.63		
2nq5A	755	48.96		
3hx3A	316	52.44		
2ddmA	283	55.02		
1alvA	173	56.86	a.39.1.8	17370
1zq9A	285	59.50	c.66.1.24	125505
1ljoA	77	60.85	b.38.1.1	73941
1eexA	554	62.58	c.1.19.3	29650
1s1eA	224	69.08	a.39.1.5	112007
1ub0A	258	70.16	c.72.1.2	88394
1yu5X	67	74.38	a.14.1.1	124039
2pjpA	121	76.30		
1qzzA	374	76.53	a.4.5.29,c.66.1.12	96719,96720
3e7qA	215	76.74		
2q3pA	112	82.38	d.58.4.4	139798
3d02A	303	83.84		
1r5lA	262	83.91	a.5.3.1,c.13.1.1	97099,97100
2k6mS	67	84.63		
1xrsA	516	84.90	c.1.19.4	115883
2fkiA	126	86.10	d.198.3.1	133657
3colA	196	88.30		
1xo5A	183	89.37	a.39.1.5	115680