# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1tvnA	293	3.670	c.1.8.3	119360
1u2wA	122	3.878	a.4.5.5	119487
2od5A	116	6.206	a.4.5.70	148736
2zfdA	226	8.017	a.39.1.5	154406
2j0fA	482	8.136		
1wsuA	124	9.927	a.4.5.35,a.4.5.35	121245,121246
2zkzA	99	11.07		
1a6sA	87	12.98	a.61.1.4	18134
7a3hA	303	13.90	c.1.8.3	28817
1k6xA	352	15.23	c.2.1.2	68238
2fozA	347	15.40		
1owlA	484	15.65	a.99.1.1,c.28.1.1	93647,93648
1kk8B	139	15.77	a.39.1.5	77430
2qorA	204	16.75		
3ecoA	139	18.29		
2pjpA	121	18.69		
1hp1A	516	20.94	d.114.1.1,d.159.1.2	70976,70977
1s1eA	224	21.27	a.39.1.5	112007
2r2iA	198	21.36		
1dwkA	156	22.06	a.35.1.4,d.72.1.1	17075,39606
2of7A	260	22.89		
1sfxA	109	24.13	a.4.5.50	105505
2gb7A	305	24.33		
1uouA	474	24.52	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
2dejA	350	25.71		
1wlzA	105	26.28	a.39.1.7	121024
1gky	187	28.96		
3e61A	277	29.79		
3lsgA	103	30.62		
1gu2A	124	31.17	a.3.1.1	76348
1ljoA	77	31.74	b.38.1.1	73941
1ex7A	186	32.02	c.37.1.1	59537
1r1uA	106	32.31	a.4.5.5	104771
3bddA	142	32.37		
1wdcB	156	32.86	a.39.1.5	17302
2ct9A	208	32.96		
1cqmA	101	34.51	d.58.14.1	39321
1uhnA	189	35.51	a.39.1.5	99399
1wv2A	265	35.97	c.1.31.1	114910
1k94A	165	36.90	a.39.1.8	68333
2bzeA	153	38.52	b.34.21.1	146224
1xo5A	183	40.58	a.39.1.5	115680
1xkzA	255	43.20	e.3.1.1	115426
1v32A	101	44.94	a.42.1.1	100277
1lvaA	258	45.27	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2j5aA	110	45.44	d.58.14.1	147886
3edtB	283	47.39		
1ks9A	291	48.41	a.100.1.7,c.2.1.6	68857,68858
1alvA	173	49.42	a.39.1.8	17370
1gt1A	159	52.68	b.60.1.1	90515
3a46A	289	53.29		
2bpa2	175	53.77		
3draB	390	54.51		
1vi9A	299	55.83	c.72.1.5	100750
1r1tA	122	56.59	a.4.5.5	104769
1z1dA	103	56.85	a.4.5.16	124351
2bpqA	373	56.86		
1lliA	92	58.37	a.35.1.2	17025
3jy6A	276	59.79		
1rw2A	152	61.54	a.118.19.1	97961
2i7aA	174	61.95		
1ulyA	192	62.69	a.4.5.58	113297
1o7dA	298	63.67	c.6.2.1	86641
3c4bA	265	69.88		
2oqgA	114	70.41		
3c1vA	113	70.49	a.39.1.2	155867
1eexA	554	72.55	c.1.19.3	29650
2c5wB	385	75.54	e.3.1.1	129958
3lupA	285	77.50		
3c6cA	316	78.27		
2a1vA	144	78.94	d.198.3.1	126019
3gw2A	108	82.24		
3gx1A	130	83.22		
2vugA	389	83.28		
2x5yA	173	84.95		
2fkiA	126	85.72	d.198.3.1	133657
2h3hA	313	86.36