# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1xrsA 516 2.624 c.1.19.4 115883 1ux5A 411 2.626 a.207.1.1 100144 3dxfA 299 3.303 1m45A 148 3.741 a.39.1.5 78598 2a6hD 1524 3.918 e.29.1.2 126265 3draB 390 4.111 1mvwB 145 4.724 i.15.1.1 79524 2o56A 407 4.873 2i7aA 174 4.892 1tvnA 293 5.291 c.1.8.3 119360 1hp1A 516 5.926 d.114.1.1,d.159.1.2 70976,70977 1qtxA 148 6.187 k.21.1.1 88375 1ks8A 433 6.716 a.102.1.2 77519 2qorA 204 6.833 1s1eA 224 8.961 a.39.1.5 112007 2fozA 347 10.78 1wdcB 156 10.88 a.39.1.5 17302 1u2wA 122 11.03 a.4.5.5 119487 3fy1A 395 11.17 2podA 410 11.58 2bv6A 142 12.35 a.4.5.28 146218 1ulyA 192 12.47 a.4.5.58 113297 3cs1A 219 12.52 3h9mA 436 13.44 2gb7A 305 14.06 2el9A 431 14.98 c.51.1.1,d.104.1.1 146887,146888 3e3rA 204 15.02 3i5gC 159 15.13 2od5A 116 15.37 a.4.5.70 148736 1qs7A 145 15.37 k.21.1.1 88373 1alvA 173 15.60 a.39.1.8 17370 3lsgA 103 15.72 2scpA 174 16.13 a.39.1.5 17256 1qv1A 195 17.24 a.39.1.5 96347 1wsuA 124 19.06 a.4.5.35,a.4.5.35 121245,121246 3huuA 305 19.15 1a6sA 87 19.52 a.61.1.4 18134 1ia6A 441 19.68 a.102.1.2 76738 3m62A 968 19.87 3ecoA 139 19.92 3c1vA 113 20.84 a.39.1.2 155867 3gp2A 147 21.23 2zfdA 226 21.81 a.39.1.5 154406 3a46A 289 21.82 2bvlA 543 22.08 c.68.1.22 146219 2e18A 257 23.84 3hibA 318 25.07 1gky 187 25.62 1zbpA 273 26.39 e.61.1.1 124861 2pnkA 428 27.07 c.1.9.8 149674 1jadA 251 27.71 h.4.10.1 66461 2ghpA 292 27.76 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1mvwC 147 27.82 i.15.1.1 79525 1g8iA 190 28.17 a.39.1.5 60363 2x8aA 274 28.20 1j09A 468 28.83 a.97.1.1,c.26.1.1 77025,77026 1pjrA 724 28.98 c.37.1.19,c.37.1.19 32391,32392 3kj0A 158 29.14 2pjpA 121 29.40 2zndA 172 30.53 3kheA 191 30.68 2zkzA 99 31.40 1eovA 487 32.11 b.40.4.1,d.104.1.1 25239,40760 1sfxA 109 32.81 a.4.5.50 105505 1vrkA 148 33.16 k.21.1.1 46451 2wocA 299 34.13 2ae2A 260 35.08 c.2.1.2 29945 2q4zA 312 35.57 2w02A 620 35.62 1wdcC 156 36.47 a.39.1.5 17317 2hpsA 186 37.39 1ujnA 348 37.93 e.22.1.1 99460 1rw2A 152 38.02 a.118.19.1 97961 1pzxA 289 38.51 c.119.1.1 95484 1dwkA 156 39.84 a.35.1.4,d.72.1.1 17075,39606 1exrA 148 40.13 a.39.1.5 17299 1k94A 165 40.44 a.39.1.8 68333 3i5aA 334 40.58 3fozA 316 41.38 2fvyA 309 41.70 c.93.1.1 134227 3k21A 191 41.77 2og9A 393 42.21 1a2xA 159 43.01 a.39.1.5 17251 3bqzA 194 43.21 1pjr 724 43.43 1y1xA 191 43.77 a.39.1.8 116374 3a2kA 464 44.18 3e6uA 411 44.53 1brwA 433 44.53 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 3ju7A 377 45.24 1r71A 178 45.91 a.4.14.1 104823 2j5aA 110 46.08 d.58.14.1 147886 3f4lA 345 46.52 3h7lA 586 47.66 2rfmA 192 47.77 1jfzA 154 48.17 a.149.1.1 66655 1z1dA 103 49.05 a.4.5.16 124351 2ouxA 286 49.71 a.118.26.1,d.37.1.1 149031,149032 2jkvA 505 49.81 3keaA 285 51.03 2r6iA 284 52.06 d.381.1.1 151612 2pjrA 548 52.20 c.37.1.19,c.37.1.19 32395,32396 1gvjA 146 53.52 a.4.5.21 90525 3f2kA 226 55.15 3gw2A 108 55.22 1s1pA 331 55.75 c.1.7.1 98350 2bl0C 142 55.99 7a3hA 303 57.29 c.1.8.3 28817 1o7dA 298 57.30 c.6.2.1 86641 1ex7A 186 58.05 c.37.1.1 59537 2vatA 444 59.09 c.69.1.40 152831 2q6fA 309 59.45 3c4bA 265 59.70 3chvA 284 60.23 1hqvA 191 60.62 a.39.1.8 61160 2j1dG 483 60.87 2ct9A 208 60.93 1w0dA 337 61.12 c.77.1.1 114060 1ggzA 148 61.61 a.39.1.5 70176 2rhsA 294 61.67 2dznA 228 62.61 d.211.1.1 146617 1r1uA 106 63.56 a.4.5.5 104771 2fp4B 395 64.55 c.23.4.1,d.142.1.4 133897,133898 2j07A 420 64.96 a.99.1.1,c.28.1.1 137891,137892 3cjnA 162 65.32 3gd6A 391 65.35 2zo4A 317 66.02 1z91A 147 66.61 a.4.5.28 124736 1udcA 338 67.71 c.2.1.2 29785 3goyA 193 68.45 2nn6B 249 71.06 d.14.1.4,d.101.1.1 148297,148298 2qlzA 232 71.09 1kk8B 139 71.58 a.39.1.5 77430 2rdpA 150 72.74 2obhA 143 73.02 a.39.1.5 148716 1hleA 345 73.29 e.1.1.1 42618 3g3zA 145 73.38 2b78A 385 73.92 b.122.1.9,c.66.1.51 128025,128026 2gokA 429 74.00 b.92.1.10,c.1.9.17 147145,147146 2bpqA 373 74.07 3fwbA 161 77.63 1w3wA 327 77.71 1owlA 484 79.14 a.99.1.1,c.28.1.1 93647,93648 2vx5A 396 79.91 1dm5A 315 80.33 a.65.1.1 18186 2i1mA 333 80.48 1df0A 700 81.93 a.39.1.8,b.14.1.1,d.3.1.3 17375,23674,37106 3eagA 326 82.76 2cfcA 250 83.33 2h1yA 321 83.81 2h2zA 306 83.82 1tltA 319 86.00 c.2.1.3,d.81.1.5 107135,107136 3gfmA 146 86.03 1auiB 169 87.08 a.39.1.5 17325 3k0lA 162 87.46 1wzdA 215 87.57 a.132.1.1 121493 3h9xA 125 87.69 3d3yA 425 88.31 3igzB 561 88.56 2g7sA 194 88.73 a.4.1.9,a.121.1.1 134737,134738 2a9iA 113 89.88